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ET13738

CSHL Arabidopsis genetrap mutant lines

Original: ET13738

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13738

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 509876 [Map]; Strand: c
      • AT1G02460.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: -2672; Region: intergenic
      • AT1G02470.1 - [+] show detail - Polyketide cyclase/dehydrase and lipid transport superfamily protein
        Distance: 1889; Region: intergenic
    Flanking Genome Sequence: ET13738 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACTTACT GTTTTCATCC CAAGGATACA 
    TACATATATA CATTCATATA CATGTATGTA TAACATCGTG GGGTTTGTGA 
    AATAGGATAT TATGAAAGAA GTTACATACA CATATACACA TGTGTTTTTA 
    ACATTGTGAG TGTGATTGTG TGAATAGAAG ATATATTGGC TCTTCAAACT 
    TCTGCCCCAA TCTAGAGGAT TTGGTAGATA TACACTTTGC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 509789 [Map]; Strand: c
      • AT1G02460.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: -2585; Region: intergenic
      • AT1G02470.1 - [+] show detail - Polyketide cyclase/dehydrase and lipid transport superfamily protein
        Distance: 1976; Region: intergenic
    Flanking Genome Sequence: ET13738 - 5-prime edge 
    AAGAGCATGC AATATCTTCC ATCCTCTTAA AGTAGCCATA GACATTTAGA 
    GTCTTATAGG TATTCTTAAG CAATTGACAT AGCCTCTTGC CGTATATGGA 
    CCAACTAGTT CATTCTCACT CGA

AT1G02460.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: stem, root, stamen, seed; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G01890.1); Has 5413 Blast hits to 5130 proteins in 651 species: Archae - 6; Bacteria - 1539; Metazoa - 261; Fungi - 1343; Plants - 1850; Viruses - 100; Other Eukaryotes - 314 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02470.1

Model type
Protein coding
Short Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Computational Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G02475.1); Has 391 Blast hits to 391 proteins in 131 species: Archae - 0; Bacteria - 247; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).
Link
InterPro Scan - TAIR