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ET13751

CSHL Arabidopsis genetrap mutant lines

Original: ET13751

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13751

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 11604319 [Map]; Strand: c
      • AT3G29788.1 - [+] show detail
        Distance: -495; Region: promoter
      • AT3G29767.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET13751 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC AACGTTGGTA 
    AGCGTCATTT TCTGCTGCCA TCACAAGAGG AGAAGGTTTT GCAAGAGTTT 
    CTTGTTGCAA AAGACAAAGA TTGTCATACG CTTCTTTGCA TTTCTTTACC 
    AAGTTTCCAA GACTGTTTTT TGCCGAAACA CACAGCTTTG GTTTAAGCGC 
    TTTTAGCTTC TTTGAGAAAC GAAATAGGGT TGAAGTCTAT AGGAACAAAT 
    CATCTGTGTA TTGCCAATGG TTTTGGACCA ACGGTAAGAA CTCCTCCATC 
    TCCGTAAGGA CATTAACAAA TTTGAAAGGC TTCCGACCTC CCGCCATTAC 
    C

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8663737 [Map]; Strand: w
      • AT2G20080.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon2 (CDS)
      • AT2G20080.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET13751 - 5-prime edge 
    TTTAAGACAA AAAAAATATA TAACATGTTA CACCTACACA TATAAGTGTT 
    TTTATATGTA CCTCATGGTT GCTCTGTCGT ATTGATCTCT ATGTACTCCC 
    ATCTGCGAAG AGCAAAAGAA AAAAAAAAAA GGGATGGGGG GGTTTTTTCC 
    GGGGGGAAAA ATTTTTTTCC TTTTTTTTCA AAATTTTTAA AAAGGGTTTT 
    TAAAAATGGG AAAATTTTCC CCCCTTTTTT TGGAAAAAAT TTTTTTCCCA 
    AAAAAAATGG GGTTTTTGAA AAAAAAAGAA AAAGAATTTT TACCCCCATT 
    AAGTGAGGGG TTTAACCCCT AACCTTTGGA ACCTAAAAAA AAAAAATTTC 
    CCCTCTTTTT TGGGAAAAAA CCCTAAGGGC CCAAAAATTG GGGGGGGTGG 
    GAAAAAAATC CCCTTGGGCC CCCCCACCCC CCCTAAACCC AAATTTTGAA 
    ACAAATTTTT AATTAAAAAA AAATTTTTTC CAAAAAATTT TTTTTTAAAA 
    AAAAAATTAA GAAAATTTTG GCAAATTTTT TTTAAAAAAT CTAAAATT

AT2G20080.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28840.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G20080.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28840.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G29767.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 35% identity and 7.4e-43 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}
Link
InterPro Scan - TAIR

AT3G29788.1

Model type
Pseudogene
Curator Summary
unknown pseudogene
Link
InterPro Scan - TAIR