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ET13753

CSHL Arabidopsis genetrap mutant lines

Original: ET13753

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13753

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 11604318 [Map]; Strand: c
      • AT3G29788.1 - [+] show detail
        Distance: -494; Region: promoter
      • AT3G29767.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET13753 - 3-prime edge
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CAACGTTGGT 
    AAGCGTCATT TTCTGCTGCC ATCACAAGAG GAGAAGGTTT TGCAAGAGTT
    TCTTGTTGCA AAAGACAAAG ATTGTCATAC GCTTCTTTGT ATTTCTTTAC
    CAAGTTTCCA AGTCTGTTTT TTGCCAAAAC ACACAGCTTT GGTTTAAGCG
    CTTTTAGCTT CTTTGAGAAA CGAAATAAGG TTGAAGTCGA TAGGAACAAA
    TCATCTGTGT CTTGCCAATG GTTTTGGACC AACGGTAAGA ACTCCTCCAT
    CTCCGTAAGG ACATTAACAA ATTTGAAAGG CTTCCGACCT CCGCCATTAC
    CGTTACTCAT ATTTCCTTCT ATTTGCATAA TCCGGCCCCG AAGATGATCA
    GAAATACCTC GTGACTCAAA AATATTATAT GCATGCGGGA AGACTTGCAG
    CCACATATCA TTCTCCATAA CTCTATCGAG TTTCTTAAGA ATTAAGTCAT
    TTTCCCTCTT GTTACACCAA GTGTAAATAG GTCCTTGTGA CGCCATATCC
    GCGTGTGAAC AATAGTTGAC TAGGCTCTGA AAATCCCGCA TCCCTCCTGT
    AACCAAAGGG TTCGTGTCTA CTCGAGAATG CTCAGCCAAG TCTAGAGTGA
    CATTAAAGTC TCCAAATATC AACCATGGTT TATTTTGAAA CATAGGAGAG
    TCGTAATGAT CTCGTAGCTC CTGCCATAGT TCTTTGCGTT CCTCTACACC
    ATTAGAAGCA TAGACAAAGG AACAAAAGAA TTCGTCATCG AGCTCCTCAA
    GCTTCACCGA ACAAGTAATT AATTGAGCAG ACTTATAGAA GGGGCTCAAT
    CTAACATGAC TTTGCCAAAC TACCCAAA

AT3G29767.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 35% identity and 7.4e-43 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}
Link
InterPro Scan - TAIR

AT3G29788.1

Model type
Pseudogene
Curator Summary
unknown pseudogene
Link
InterPro Scan - TAIR