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ET13756

CSHL Arabidopsis genetrap mutant lines

Original: ET13756

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13756

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28423339 [Map]; Strand: w
      • AT1G75690.1 - [+] show detail - DnaJ/Hsp40 cysteine-rich domain superfamily protein
        Distance: -54; Region: promoter
      • AT1G75700.1 - [+] show detail - HVA22-like protein G
        Distance: -557; Region: promoter
    Flanking Genome Sequence: ET13756 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TAATTTCGTC 
    ACACTTCCAT CAAATATCTT ATTAAGCCAC GTGAACAAAT CTTAGCCATG 
    GAAACATAAT CTAGTGGCTG AGATTAACCC AAAACTACTG GTTCTTCTTC 
    TTCCTCTCAT CCATCTTCGC GCGCTTAAGC GATTCTCTGC AAAGCTTCAT 
    ACCAAACAAA GAGAAGTCGA AATGCCAGTT TCAGCTCCAT CTCCGCCTCG 
    TCTTCATTCT CCGTTCATTC ACTGTCCCAT CAATTTCACT CCTTCATCTC 
    ACTCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5347199 [Map]; Strand: w
      • AT3G15800.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: 211; Region: intergenic
      • AT3G15810.1 - [+] show detail - Protein of unknown function (DUF567)
        Distance: 623; Region: intergenic
    Flanking Genome Sequence: ET13756 - 5-prime edge 
    CTACTTTCTC CCTGGTTGAA TGTTGGATTT TTCTACATTA TTCTCTAAAT 
    ATTTCATCCC AAGTCAAAAA CAGTTAAAGA AAAAGTTTAT TACATAAGCT 
    GCATATGTGA GTTTTTGATG GGACTCAATC ACATGAAAAC ATCACTAGCT 
    ACATAACTAT TTAAATGTTG TGTACTCACA TAAATTTTGA TCAAGTATTT 
    GTTCTAACTA TAAAATTATT TTATTTGTTT TGTCCATTGT CTACTTGGTA 
    TATATAGCTA TCAACCATGT ATTTACGTGA GCATGAAAAT TTTGATTACG 
    TTAACGAATC AAATCTAGAG AGTGCATTAG TCAAGATATA TCTTCTCTCT 
    TTATTAGATG CCTATATAGT TTTCTTATAA ATCTTATTCG ACCACCTATT 
    TATGTATTAA TATTCCTACG CACTCTCTGA TCTTGTGTCA ACTAACATTA 
    ATAAAATTAT TCATGAGATT CAATTTCCAC TTGGCAGTAA ACATGTGTAC 
    GATACACGTT ACATCTCTCC TATATATTAA AAAAGTTAGT ACTTCGATAG 
    AAACATTTTG CAACTAACAC AATAAATAAA AATTTATCAA TCGAACTTAT 
    AATTAATTAA ATCTTTAACA CATCTAATCT GGTCAACTGA TAGATTTTGG 
    GATCGTCATA ATTTTAAAAA TTTTCTA

AT1G75690.1

Model type
Protein coding
Short Description
DnaJ/Hsp40 cysteine-rich domain superfamily protein
Computational Description
DnaJ/Hsp40 cysteine-rich domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305); Has 581 Blast hits to 563 proteins in 197 species: Archae - 4; Bacteria - 299; Metazoa - 12; Fungi - 21; Plants - 163; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G75700.1

Model type
Protein coding
Short Description
HVA22-like protein G
Computational Description
HVA22-like protein G (HVA22G); CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22-like protein H (ATHVA22H) (TAIR:AT1G19950.1); Has 1473 Blast hits to 1473 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 703; Fungi - 189; Plants - 488; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G15800.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Computational Description
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT2G26600.1); Has 2147 Blast hits to 2134 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 2137; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G15810.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF567)
Computational Description
Protein of unknown function (DUF567); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF567) (TAIR:AT1G80120.1); Has 436 Blast hits to 435 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 7; Plants - 429; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR