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ET13779

CSHL Arabidopsis genetrap mutant lines

Original: ET13779

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13779

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26255430 [Map]; Strand: w
      • AT1G69770.1 - [+] show detail - chromomethylase 3
        Distance: -1845; Region: intergenic
      • AT1G69780.1 - [+] show detail - Homeobox-leucine zipper protein family
        Distance: -3509; Region: intergenic
    Flanking Genome Sequence: ET13779 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACGCGAC CGTTTTCATC CCTAGTCACA 
    CCACTCCTAG TCCTAGCGAA CTAGCTGCAT AGTGTAAAAT ACTTTATATA 
    TGAAAAACTT AGACATAAAT ATATATACGT GTGCGTGTGT GATGCATGTT 
    TATTGTTTTT TATTCAGGCC TATATGCATT CTACATGTTT TAGATCAAGA 
    TGGTGATACA GAGACACTAC TAATACAAAC ACTTGCATAA ATCCTCTATG 
    ATTATGTCAT TCGTATTCAT TATTTTAAAA AGAAAATTGA CGTCAATACT 
    TGAAATACAT TAATTGATAT ATGTTTTCCT AGTTTTGGAG AAAAGGGTGG 
    TGTTCATATG TTGCAAAACA CAAACATGTA AATACAGCAA AGAAGACATA 
    GTGGACCCAT GACAAGAAAT AAGGCCCAAA AGTTGGGCTA ATTTCAGCCA 
    TCACGACAAA GGCTACTTCT CATTTCGACA TCCATATTAT TCTATTCTTG 
    TACACTTCTC T

AT1G69770.1

Model type
Protein coding
Short Description
chromomethylase 3
Curator Summary
Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing.
Computational Description
chromomethylase 3 (CMT3); FUNCTIONS IN: DNA (cytosine-5-)-methyltransferase activity; INVOLVED IN: in 6 processes; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), DNA methylase, C-5 cytosine-specific, active site (InterPro:IPR018117), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 2 (TAIR:AT4G19020.1); Has 4337 Blast hits to 3739 proteins in 974 species: Archae - 208; Bacteria - 2545; Metazoa - 230; Fungi - 161; Plants - 416; Viruses - 30; Other Eukaryotes - 747 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G69780.1

Model type
Protein coding
Short Description
Homeobox-leucine zipper protein family
Curator Summary
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
Computational Description
ATHB13; FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cotyledon morphogenesis, regulation of transcription, DNA-dependent, response to sucrose stimulus, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 23 (TAIR:AT1G26960.1); Has 11763 Blast hits to 11710 proteins in 595 species: Archae - 0; Bacteria - 0; Metazoa - 9272; Fungi - 193; Plants - 2061; Viruses - 5; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR