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ET13808

CSHL Arabidopsis genetrap mutant lines

Original: ET13808

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13808

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22395252 [Map]; Strand: w
      • AT3G60580.1 - [+] show detail - C2H2-like zinc finger protein
        Distance: 208; Region: intergenic
      • AT3G60590.3 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -2976; Region: intergenic
    Flanking Genome Sequence: ET13808 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACTTACTA 
    CTAGCTAGAA GTAGCTTTCA ATAACAAAGT AGAAGAAGCC AAGAAGAGTC 
    AAAATTACGC CTTAACACAA ACATTAAAAG TCTACACTTT CAATAATAAA 
    GCCAACATTA ATAGTCTATA AACTAAGTAG AAGCTTATTT GAATGTTCTT 
    CAATTTTATG TGGTTAGGCC AACACGACGT GAGGCCAATA CGAAAAAAAG 
    AATCGGCGTT AGAACATGTA AAAGTAGCCT CCTTTGCATT TAAAATAAAA 
    CATTATCTTT CTTTTTTTTG TCTAGCTCGA CCCCAAAAAT AATAATAGTA 
    AAAGAAGAAA AAAAAAAATT TCAACTTTTC CAAAAATTTG AACAACCCAA 
    ACCCCCCAAA GCCGGTACCT TTTTTCCGCC TTCCTTGGAA CCCCCCCAAA 
    AACTCCTCTT TCTTCGGTGG GGGCGGGAAA ATAAAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1260431 [Map]; Strand: c
      • AT4G02820.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: ET13808 - 5-prime edge 
    AAAAGAGATT TTAATCATGT TAAATTCTGA AAAGAAAAAA ATCCGGAAAA 
    TCACATCTTT GTAGCAGCTT CTTTCCTTAC CAGCTTTGAA CCCTCTCCTC 
    GCGCTCTATA T

AT3G60580.1

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Computational Description
C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G45120.1); Has 2639 Blast hits to 2349 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 1624; Fungi - 13; Plants - 935; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60590.3

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02820.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G02150.1); Has 15018 Blast hits to 7498 proteins in 232 species: Archae - 0; Bacteria - 55; Metazoa - 87; Fungi - 92; Plants - 14442; Viruses - 0; Other Eukaryotes - 342 (source: NCBI BLink).
Link
InterPro Scan - TAIR