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ET13822

CSHL Arabidopsis genetrap mutant lines

Original: ET13822

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13822

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17622192 [Map]; Strand: w
      • AT1G47860.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET13822 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTTCTTG 
    GAGAACTATC CATGTAACCA ATGGAATAAA GCAGGAATCT ATTGTTAATG 
    CACGAATTAA ACAAGTACGA AAATGGGATC TCTAGGGAAG GAAGAAGAAT 
    CTTTCTATTA ATGACGAGCC CGCGACTTAG GTGAATTGGA CGGATTACAA 
    AGGATGATTT CTTCAACAAG CATAAATGGA GTAAGAACGA GCCGATTGTA 
    GATGAAAGAC GAGCTTGAGG CCGGAAGACG ATCTTGATAG CTGAACCTTG 
    TAAAAGGCTG CCTACGTACC CTTAGAAAGG GATCAAGCCA CACGTAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20412311 [Map]; Strand: w
      • AT1G54660.1 - [+] show detail - pseudogene, similar to vetispiradiene synthase, blastp match of 54% identity ...
        Distance: -862; Region: promoter
      • AT1G54680.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -824; Region: promoter
      • AT1G54680.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -824; Region: promoter
      • AT1G54680.3 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -824; Region: promoter
    Flanking Genome Sequence: ET13822 - 5-prime edge 
    TCAATCATTG TAAGTGTCAT TATAGTTTCT TACATATATT AACATAACAA 
    TTAAAAAGAA AGGGTTGCCT TCCATGCCAA GCCAGCACAT GGACCGAATT 
    GTTACTCGCT ACAGTGAGGT GACTGGTGAG ATGGGAACAA GTTGCCATGA 
    TGTATGCAGG TAAGTGAGGG ATGAACGCCT GTCTGTGTTG CTGCATGCCT 
    GCATGTGCTA TTTGTTTGTT TCCAAGGTGG TGTGATCTGC CCCCGAGGAA 
    TGTCTAGGAG AAGGGTTTTC TGCTGTGATT GCTGAAGGCA AATAATAATC 
    AAGAGTCGAG GAACAAAATT TGTTTCAAAT AAAGTGGAAA GAAATTCATA 
    TTTGAAACTC CTTCGTTTTT TAAACAGTTC AACATTTGAT GTAGATTTAA 
    AAAATGTAAA TTCTATTTAA TAGGCTGTTC TTTTTTTTAT ATAATATGTG 
    AAATCTATAA AAATTAAATA ACTATTTGAA AAAAGCTTTT AAATTGATTA 
    TAATTTTGTA GTGGGTTAAA ATCTAGAATG TCCATAAAAA TATA

AT1G47860.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.0e-40 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT1G54660.1

Model type
Pseudogene
Computational Description
pseudogene, similar to vetispiradiene synthase, blastp match of 54% identity and 3.0e-79 P-value to GP|5360685|dbj|BAA82108.1||AB022719 vetispiradiene synthase {Solanum tuberosum}
Link
InterPro Scan - TAIR

AT1G54680.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27290.1); Has 200 Blast hits to 200 proteins in 57 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G54680.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27290.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G54680.3

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27290.1).
Link
InterPro Scan - TAIR