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ET13828

CSHL Arabidopsis genetrap mutant lines

Original: ET13828

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13828

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16155687 [Map]; Strand: c
      • AT4G33625.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -965; Region: promoter
      • AT4G33625.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -965; Region: promoter
      • AT4G33630.1 - [+] show detail - Protein of unknown function (DUF3506)
        Distance: 0; Region: exon1 (CDS)
      • AT4G33630.2 - [+] show detail - Protein of unknown function (DUF3506)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13828 - 3-prime edge 
    TTTTACCCAC CGTTACCCAC CGATTTCATC CCTAGTCTCC CCGATCCCAC 
    CGCTCTCTGT CGCTGCTCCT CCTCCTCCGG CAGCAATTCT TCCTCTTCCT 
    CTTCCTCCGA TGATAACCCT AGATGGGACT CTGCGATTCA GGATGTTCTC 
    AAGAGCGCCA TCAAACGCTT CGATTCGGTT TTGAGCTGGT ACGCTACTCT 
    GGATAACGAT GATGGTGAGC AAGGATCGGA GAATGTCGAG AAGATTGATG 
    ATGATTGGGA TTGGGACCGT TGGAAGAAGC ATTTCGATCA AGTTGATGAC 
    CAAGACCGTC TTCTCTCCGT CTTAAAGGTT TCCTCTTGAT GATTGTATCT 
    ATCATTGTTG TTAAGAGTCC TGAAGAAATG TTTCTAATGC GGGGATTTTG 
    TATTTTGGGG TGTACAGTCG CAATTGAATC GAGCCATTAA ACGAGAAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16155620 [Map]; Strand: c
      • AT4G33625.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -898; Region: promoter
      • AT4G33625.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -898; Region: promoter
      • AT4G33630.1 - [+] show detail - Protein of unknown function (DUF3506)
        Distance: 0; Region: exon1 (CDS)
      • AT4G33630.2 - [+] show detail - Protein of unknown function (DUF3506)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13828 - 5-prime edge 
    CCTACTTTCT CCCTGGGGGA GACGATGAGG GTAAAAAGAT CTTTTGGAGG 
    AGGGAGTGAG TCTGGATGAC GTGGCAGAAG CGGCAGGGGA GAAGGCGAGA 
    TTTTGGGACG GCGGGGTGGA TAAGGAAGGC ATCGCCGGAG AGATGTGAGA 
    GCGTGTGGTG GTGGAAGAAA TCGAATATAG TTTTGTGTTG TGTGGACGAT 
    GATGATGATA TGGGCTTTTG ATTGACCAAA AGGAATATGT GACTCGTGAC 
    TGACTTATGT GTTATGTGGT CATGTCCGTT TATTAACCAA CCAAACCGCA 
    ACGTTTATTT TATTTTTGGT ATGCGGATCA ATTCGAACGG AATGCTAATC 
    CAAAAAGACC AAAATTTCTA ATTTATAGTC CAGTTTTTGA GTAAAATTTT 
    AGCGTATTCA GACTCAAATC TCTACATAAT ACAAAATTTT GGAGATTATT 
    GTAGATGAAA GTGAAAATTA GTAGTGTGTT ACGGCAAAAA TTGTTTGTTG 
    TGGTCTTGGG TTTTGGTTTT AGAACTAGAG CTAGAGCTAG AGCTAGAGCC 
    AGTCATATAT TTGTTAGCCC ATTGACTTCT AATGGGCTCT ATAGGATTAT 
    TTAACCTCAC TAAGAGGAAG CTAGGTCGTA TCCATGAACA TGTTACATGT 
    GACTAGACTG GAGTGTTGTA ACCACTCTCC CAAGTGGTTC CCATCGACTT 
    CATTAACTCT AC

AT4G33625.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 59 Blast hits to 59 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G33625.2

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G33630.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3506)
Computational Description
EXECUTER1 (EX1); FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: response to singlet oxygen; LOCATED IN: thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3506 (InterPro:IPR021894), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3506) (TAIR:AT1G27510.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G33630.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF3506)
Computational Description
EXECUTER1 (EX1); FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: response to singlet oxygen; LOCATED IN: thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3506 (InterPro:IPR021894), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3506) (TAIR:AT1G27510.1); Has 324 Blast hits to 312 proteins in 85 species: Archae - 0; Bacteria - 8; Metazoa - 98; Fungi - 41; Plants - 94; Viruses - 5; Other Eukaryotes - 78 (source: NCBI BLink).
Link
InterPro Scan - TAIR