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ET13843

CSHL Arabidopsis genetrap mutant lines

Original: ET13843

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13843

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21428716 [Map]; Strand: c
      • AT3G57870.1 - [+] show detail - sumo conjugation enzyme 1
        Distance: 0; Region: exon5 (3UTR)
    Flanking Genome Sequence: ET13843 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGTC 
    TTAAGGTGCC AAAATGAGGA GTTTTCAATC ACCCAATGAC ATCTAAACAT 
    AATGACACAA GACGAGAAAA TATTCAGAGC TTGTCATCAG TTTTGGTGCG 
    TTCTCTTTTT TGAGGTTTTA GACAAGAGCA GGATACTGCT TGGACTGCAG 
    CTTCACCCTT TTCTTGTACT CAACTGGATC CTGCACAATA ATCATCAACA 
    ATCACTCGAC TTAGTTCCTT CCTATGTTTC AAAACCTAAT ATTGTGTTTA 
    GAGTTTTCAT TTCTAAATGT ACCTGACAGA AGAGATGATA ACCATCTGTC 
    TGTGCAGGGT CAGCGGGATT CGGTGTGTCA AGTAAATCCT GAATACCAAC 
    AAGAATCTGC TTCACGGTGA TGGCTGGTCT CCATCCCTAT GGATATACAC 
    ATAACAAAAG AGAGCTTGAG GATAAAGCTG GCTTTTGCTC ATGGAGAAAT 
    GCAAAGAAAG AAACAGTAGA GTACTTACAT AATCCTCGTT AAGGATAGAG 
    AGACAGACAG TTCCAGATGG ATAGACATTA GGGTGGAAAA ACCCTTGTGG 
    AAATTTACAT TTCGGAGGTT TGCTCGGATA ATCCTCACTG AAGTGCATCG 
    TTAATGGAAA GAATCCACCT TCCCAATCAG TCTGCAGCAG AGAAACATGT 
    AAAATTAGCT ATAAACAACA GTAAAGATTG ATATTAGCAA TTGCTCTTGC 
    AGTAACACTC TTATTAGCCA TGTCAAAGTA AGATACACAG CAGAGTTCAG 
    TTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21428663 [Map]; Strand: c
      • AT3G57870.1 - [+] show detail - sumo conjugation enzyme 1
        Distance: 0; Region: exon5 (3UTR)
    Flanking Genome Sequence: ET13843 - 5-prime edge 
    TCCTACTTTC TCCCTGCTTA AGACACTGGA ATCTATTTAT TTTCGAAAAA 
    AAACTCTTCT TTCTCTATTT AACTGTTAAT ATTCTTGGTA CTGATTCAGT 
    TGGTGTTGCT TCTATATAAT ACATAATTAT GTTCTCTGGT CGTTCATGAG 
    TGTTGTCCAA ATTCTACTAA GTGAAATATG AAGTCTTCAT TCCATAGAGT 
    AACGAATCTT AGTTGTGAAT CTAGAAATAC ATATATTTCT AACTTGAAAC 
    TACGCTTAAC ACTTGAAAGT CAAAATCTTA CTCCTCTAAA ATTTATACTC 
    CACTGATTTT AGACTTTTGA AGTAGTATTA GTGCTTGTTA GTAAATTGTT 
    TGCTACTTGG AACATTTTTT GTCAATGATT GAGATAGAAA GCTTGGAATA 
    TTTAACAGAA CTTGGAATTT AGCTACGAAA TCAAGTGTGC AGAAAGAGAT 
    AGGCAAACAC CGTATGTCAA CAGTTACAAA GCAATAAAAC CAAACATTCA 
    ATACTTATAT ACAACTCAAT TATTGAAAGT CAACAACAAG CCAAAATCGT 
    CTACAAGTGA TGACACTTCA GATATGAAAT GTGTGAACTA TTATAATCTT 
    TCCTATGATA TCATCATCAG CAGATGATTC CTGATCTATT CTATCATCAG 
    AACAATGATT TTCCAAAACG AGTATCCTAT AAAATCGTCA AAAAGATGAT 
    TGACGCTTCT AATAAAATCA TCAGAAAATG GATACAGTCT A

AT3G57870.1

Model type
Protein coding
Short Description
sumo conjugation enzyme 1
Curator Summary
Encodes a SUMO liagse that directs the attachment of the small protein SUMO to target proteins via an isopeptide bond. This enzyme is localized to the nucleus and plants with reduced levels of this protein show higher sensitivity to ABA in root growth inhibition assays. It has high similarity to the yeast UBC9 SUMO ligase and is sometimes referred to by that name.
Computational Description
sumo conjugation enzyme 1 (SCE1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquiting-conjugating enzyme 2 (TAIR:AT2G02760.1); Has 9584 Blast hits to 9566 proteins in 388 species: Archae - 0; Bacteria - 0; Metazoa - 4206; Fungi - 2037; Plants - 1834; Viruses - 20; Other Eukaryotes - 1487 (source: NCBI BLink).
Link
InterPro Scan - TAIR