Home
Mutant Lines
ET13848

ET13848

CSHL Arabidopsis genetrap mutant lines

Original: ET13848

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13848

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 3; Position: 17735268 [Map]; Strand: c
- AT3G48050.1 - [+] show detail - BAH domain ;TFIIS helical bundle-like domain
  Distance: 0; Region: exon3 (CDS)
- AT3G48050.2 - [+] show detail - BAH domain ;TFIIS helical bundle-like domain
  Distance: 0; Region: exon3 (CDS)

CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CAATGGTGAT 
ATCAGATGTA CAATTTGTGG GATTTCCAGA TCTTTGGGAA GCCAAATCTT 
CAAGGACTCT CTCGTCAGGT ACATTCAAGT CAAAATCCAG AAACGTCCTT 
GTCTGTTTGC CAGCAGAAGT AGATGCATCA GATGTAGAGG TGTTGTTAAT 
GCTCAGTAAC ACATCCTGAG CTTTTCTTGG CTCAGCTGGG CGGAAGGCAC 
TAGTGGCAGC AGATCCTCTC CAACCAACAG CCCCTTTATT TCTCAACAGA 
TCTTCAGGTG GAACAAACGG ACCTTTGGCA GCAGCAGCAA CAGTAATAGA 
TGCACGAGTT CCACTAGATA CAGGAGCCAC CGGAAAAGGT AAGGTCTTAA 
CTGGTTGTAG AGGAGTAGGC GTCAAAAATA CAGATCCAGA GAAGTTATTT 
GAGTCCCCAT GTTTTGCATC GTCTCCATCA AAACCTTCAT TTAGATCAAA 
TTCAACTCTG GCATCCATCT CAGAGCCAGC TGAAGCTGCA GCTGAAACAG 
AAGAAGCATC TCTGGCAGCA GACGTACATT CCCC

AT3G48050.1

Model type: Protein coding
Short Description: BAH domain ;TFIIS helical bundle-like domain
Computational Description: BAH domain ;TFIIS helical bundle-like domain; FUNCTIONS IN: transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: BAH domain ;TFIIS helical bundle-like domain (TAIR:AT3G48060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G48050.2

Model type: Protein coding
Short Description: BAH domain ;TFIIS helical bundle-like domain
Computational Description: BAH domain ;TFIIS helical bundle-like domain; FUNCTIONS IN: transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Transcription factor IIS, N-terminal (InterPro:IPR017923), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: BAH domain ;TFIIS helical bundle-like domain (TAIR:AT3G48060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR