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ET13852

CSHL Arabidopsis genetrap mutant lines

Original: ET13852

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13852

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 7821789 [Map]; Strand: c
      • AT3G22160.1 - [+] show detail - VQ motif-containing protein
        Distance: -2804; Region: intergenic
      • AT3G22170.1 - [+] show detail - far-red elongated hypocotyls 3
        Distance: 229; Region: intergenic
    Flanking Genome Sequence: ET13852 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGTGTTA 
    GGCCACATTT TAATAATTTG CCTAAAAGCT CTGTTTGCCA AAAGAAGAGA 
    AAAATTGTTT ATGATTACTC AAAAATAATA ATAATAAATT TATGATCCTT 
    CTCTGATTTT AAAGAATTTT ATATTTATAC TATGTAACCC TCTCTCCTCT 
    CTTCAACAAG ATTCAAACCG CCAATAGCAT ACCACAATTT TGTTTGTAAT 
    TTGGGCAAGA TTAATCACAA GATACAAATT TGAGAAACCT AATCAAGAGA 
    ATTAACAAGA GTTTACAAAT AGAGAATATT CTTGTAACAC TGTTTCTTCC 
    TTCCCTTACA ACGAACAGTC AAATGATCAA ACATATGATC ATCAGAACTA 
    ATACAAACAA TATTAACAGA ATCGAATCTC TGAGAATAAA GGCGAAACAA 
    TACAACATCC TATTTTTAAC ACTTGAGAAG ATAAAACAGA GCTTTGGCTC 
    ATGTTCTGTT CCAAACCTAA CCGCGTCCTA GTGCTCGTTG GC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 7821730 [Map]; Strand: c
      • AT3G22160.1 - [+] show detail - VQ motif-containing protein
        Distance: -2745; Region: intergenic
      • AT3G22170.1 - [+] show detail - far-red elongated hypocotyls 3
        Distance: 288; Region: intergenic
    Flanking Genome Sequence: ET13852 - 5-prime edge 
    CTTTCTCCCT GCCTAACACA TTCTATTTTG TATAGAAGAA ATTATTTAAA 
    TACTGTTATT AAAAAAAACA TTAATGAATA AATACGATTT AGTAATTTAA 
    TGTAAAAAAA CAAACAAAAA TTTCTATAAA TGTTAAAGAG ATGAATTTTG 
    TTTTCAAAAT AAAGTCCTAA AACACATTAA AAATGTGATA TATGTAGAAA 
    ACAAATGTGG CGTTTTATTT GATTATTTTT TAGTGGCCTA AGGAAAATGC 
    TTTTTTTCTT ACATATCAAG CAAGACTCTC TTGCAATTGA GACTCATTTT 
    TCGTTTATTG TTCCAAAAAA ATTCTGGTCA CATGTAAAAA CTTATTCTAA 
    TTTCTAGGTC ATTCCCTACA TTCAAACATA GTGTTTTTCT TTTTTTAAAC 
    ACTTCACAAA CATTCGATAC ATTAGGTCCA ATATGACACG TTTTGCTGCC 
    TTAAGTTAAA AAAAGAAAGT CTATATTCTA AATCCTTAAA GATCGTACAA 
    TTGTACTCAT AAACCCTTAA TTAAAATGTA CTTAAAATCT GAGATGTTTT 
    GGTAAATAAC AAAACACGGG GCTTTTGTTA ATTTGGGTAC TTTTTAGCAC 
    AAAAATTAGA AAAAATGAAC ATTTTTAATT GGCTTACAAA AATGGGTACT 
    TGCTG

AT3G22160.1

Model type
Protein coding
Short Description
VQ motif-containing protein
Computational Description
VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: stem, inflorescence meristem, sepal, leaf, stamen; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT4G15120.1); Has 263 Blast hits to 244 proteins in 52 species: Archae - 0; Bacteria - 16; Metazoa - 25; Fungi - 26; Plants - 140; Viruses - 8; Other Eukaryotes - 48 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G22170.1

Model type
Protein coding
Short Description
far-red elongated hypocotyls 3
Curator Summary
A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1.
Computational Description
far-red elongated hypocotyls 3 (FHY3); CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), Glycoside hydrolase, family 10 (InterPro:IPR001000); BEST Arabidopsis thaliana protein match is: FRS (FAR1 Related Sequences) transcription factor family (TAIR:AT4G15090.1); Has 1557 Blast hits to 1407 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 102; Plants - 1437; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR