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ET13854

CSHL Arabidopsis genetrap mutant lines

Original: ET13854

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13854

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9174523 [Map]; Strand: w
      • AT1G26550.1 - [+] show detail - FKBP-like peptidyl-prolyl cis-trans isomerase family protein
        Distance: 1583; Region: intergenic
      • AT1G26558.1 - [+] show detail - other RNA
        Distance: -1088; Region: intergenic
    2. Chromosome: 1; Position: 28105744 [Map]; Strand: w
      • AT1G74800.1 - [+] show detail - Galactosyltransferase family protein
        Distance: -632; Region: promoter
    Flanking Genome Sequence: ET13854 - 3-prime edge 
    GTAGAGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TAGCTACCTG 
    CGATCTAAAA AAGCTCTCAT CTCTCTTTCA CTTTCATTTC TCCTCTCTTT 
    CATCTCTGCC GCAGCGACTG TAATTCGGCC ATTCCGTAGA CGCTGGAATT 
    TTCAACGTCT CAAATTCCCT TTCTCCTATC TCTTCAGATC TATCGCTGCG 
    ACTCTTTCAT TCATCTCACC T

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 9595464 [Map]; Strand: c
      • AT3G26210.1 - [+] show detail - cytochrome P450, family 71, subfamily B, polypeptide 23
        Distance: -221; Region: promoter
    Flanking Genome Sequence: ET13854 - 5-prime edge 
    CTGCAGGTAG CTGACGTAAC GATCAATCAA AGAACAGGGC CCACACATCC 
    CCCAGTTAAA TTTTATATAT ATAAACCTCG AATAATTTAT CGAAAATTCA 
    TCATTGACTT TGCACTATTG AAACTGACAT GAAATAGAGA GTTGCCGTGC 
    AAAAATCATC CTCTGAAGTC TACTAAAGAC TCCAAAGTCT TCGAGACTGA 
    AAAGTCTAGT TGATCCAAAA AATAAAAATA TTGAAAAGTC TAATTTCATC 
    TCACTCGA

AT1G26550.1

Model type
Protein coding
Short Description
FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Computational Description
FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: isomerase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, PpiC-type (InterPro:IPR000297); BEST Arabidopsis thaliana protein match is: peptidylprolyl cis/trans isomerase, NIMA-interacting 1 (TAIR:AT2G18040.1); Has 6979 Blast hits to 6709 proteins in 1619 species: Archae - 14; Bacteria - 5328; Metazoa - 276; Fungi - 185; Plants - 213; Viruses - 0; Other Eukaryotes - 963 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G26558.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR

AT1G74800.1

Model type
Protein coding
Short Description
Galactosyltransferase family protein
Computational Description
Galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT5G62620.1); Has 2254 Blast hits to 2220 proteins in 111 species: Archae - 0; Bacteria - 6; Metazoa - 1612; Fungi - 6; Plants - 579; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G26210.1

Model type
Protein coding
Short Description
cytochrome P450, family 71, subfamily B, polypeptide 23
Curator Summary
putative cytochrome P450
Computational Description
"cytochrome P450, family 71, subfamily B, polypeptide 23" (CYP71B23); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71 subfamily B, polypeptide 7 (TAIR:AT1G13110.1); Has 33413 Blast hits to 33146 proteins in 1707 species: Archae - 46; Bacteria - 3254; Metazoa - 12207; Fungi - 7086; Plants - 9648; Viruses - 3; Other Eukaryotes - 1169 (source: NCBI BLink).
Link
InterPro Scan - TAIR