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ET13856

CSHL Arabidopsis genetrap mutant lines

Original: ET13856

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13856

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5278 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron16 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron15 (CDS)
    Flanking Genome Sequence: ET13856 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACGGGGA GTTCCAATAT 
    AAGCTTTTCA GAGTTGCTGT GGACCTCGAA TGGACTGAAA TGCATATCAA 
    AGAATCGTTA CCATCACTGT ACTGTTGCAT TAAGAGCATC ATCGATTAGC 
    TTGTTCAACT TTTTTCTTGT AGATTCTTAA AACAGTTATC ATTGTCTACT 
    ACTGTGACAG AGAACCGAGC TGACAGAGGG GAAAATATAC ATGATGAAAG 
    GGCTAGTACC AATAAACTCA GATTCAGAAA TACTTTACTT ACATGCGAGA 
    GGGTCAAGCT CAAGATGGCA GCCTTTGTCT CCAAAAGATT CTGAAAATTT 
    TCAGTAAGTG GTTTTCTTTA GTAGACACAC TGGAATCTAT CTCATTAATT 
    TGTTCAATTT CCCTGATGAT GTTTTCAGGC CCTTTTTCAA CCCTCGTAAA 
    CCAATCTCTT TGTCAAATCT TGGTGAAATT CCTCTTTCAA GGTTAATTTC 
    CAGTAGTCCA AGCTTTTTAT GAAACACTCT TTACCGCACT TTGCTAATCT 
    ATACCCTGTC ATCTCTAATT ATGTCCTTCA GTGAATTTGA TATCGCTGCG 
    TACGTTGTAT ATGTTGGAAA TGCATACACG GATGTTCTAC AAAAGAAGCA 
    GTGGGTGTTT GTGACAGATG GATCCGCACA ACATTCAGGG GAAATCTCAA 
    ACAGTCTTCT TGCTATAAGC TTCAGCACCT CATTCATGGA TGATAGCTCT 
    GTTTCCCACA TCAGCCATAA TTTGGTTGGA TCCGTGGTAT GTACAAATTC 
    TAATCTTTGT CTAGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5349 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron16 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron15 (CDS)
    Flanking Genome Sequence: ET13856 - 5-prime edge 
    CTTTCTCCCT GACTCCCCGT TCCTATAAGC TCATATGGAT AAGGTCCGTG 
    TAAACTTATT AGCCATTAGA AAAATGCCTT ATTTTAAATT GTGCATGAAA 
    CATTCAGATT TAGGCATTTG AATGTACCTG TCTCTCCGTG GGATCCCAGA 
    TTGTTACAAT GCCTTCTTTT GGATTGTGCT CTCCTTCATA ACTTAAGCTC 
    GTCAGGCCAA CAAGCCTAAT CCTCATGAAC GGGGTGACGT TCCTTTCACC 
    TAAACCAGCG TCTTCCAGAG TTTCTGCCAC TGATTTTTCC TTCCGCATTT 
    GCTGGGCTGC CTGAGGTTCA GATTGAAGCA GTTAATTACT GTAATCAATA 
    TATCAAGAAA AGGAAATTAC TATTCTACCT CAAATTTTGC TTTATATGTA 
    GTGAAAGATC TCAACTGCTC TGGGCTCATT TCTGCCATAA GAAATTCAGG 
    TTCAGCAGCC GTCTCTAACA GCTTAAAGAT CTTGGCTCCT TCTTCGCTGT 
    CAGTGTCGTT CTGGCTGTGA ACACCATTAA TTCCTCTCTG GTACTCACAC 
    ATAATACCCT CAACAAGAGC TGAGCGCCTA CGGAAAATAG AAAGAAAAAA 
    AAAGGGCAGG TTTAATTGAA AATAACCCTG GCCAAATTGC ATCCTTGGGT 
    TCTTTGGTGG GAAAAACCTT CCTTAATCAA AAGGCCAAA

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR