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ET13859

CSHL Arabidopsis genetrap mutant lines

Original: ET13859

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13859

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7886260 [Map]; Strand: c
      • AT1G22330.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -282; Region: promoter
    Flanking Genome Sequence: ET13859 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTATG 
    TGGAAGAGCT ATAATGTTAA AACCTGGCAA GTTATAGCCA GCGAAGACAT 
    ACTCAGTGCT TGCCTTGTCA CTCTTCTTAC AAAACCCCAA AGAAAATCTA 
    ATTCCTTCTT ACATTAACTT ACCAAGTCTC TCTCTATCCA TCTCTAAGAG 
    TAGGGTCAGA GGCAAAATAC GGCATCGTTT AAGAGTTCCA ATTTGCAACC 
    AAAAAATATA AAGAGAGGAA AATGAAAAAG TCGTTTCTTT GGCATTTGAC 
    GATATAAAGA AGCTAACTTT CCCTCATTTA CAATCTTTTC TTCAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7886206 [Map]; Strand: c
      • AT1G22330.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -336; Region: promoter
    Flanking Genome Sequence: ET13859 - 5-prime edge 
    CTACTTTCTC CCTGCTTCCA CAACTTTTCT TTTTTTCCTC ATTAAAATAC 
    CTTCTTTAAT GTTTTCTAAT AATATAGTGA TTATGGCAGA TTATCCGTAA 
    AGTCAAGGTA TTATTCCGAG TTGAAACAGA GTTTTACTAA TCACGCAATT 
    AAGTTGTTTG GAATCAGGAT TTTTTTACTT CACAATTTTA AAGTCAACGA 
    TAAATATATA TTTAAAAAGA GTTAGATCAG AAACCCTATT TGACATAAAG 
    CGTTGCCATG

AT1G22330.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G78260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR