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ET13883

CSHL Arabidopsis genetrap mutant lines

Original: ET13883

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13883

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19340831 [Map]; Strand: w
      • AT2G47070.1 - [+] show detail - squamosa promoter binding protein-like 1
        Distance: 0; Region: exon10 (3UTR)
    Flanking Genome Sequence: ET13883 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGG 
    CTAGTACAAG AACAACTCCA TTGTTAAATT ACAATATAAG TAACAAATTA 
    TTCTGTCAAA CAAAAAATAT ACTAATCAGA GAGAGAATCC TTAGGTTCGA 
    GAGAGATAGG AGAGGCTTTT ACACAACAAC AACAACAACA ATAATAACAA 
    CAATCTTCTT CTCCAACAAG TATCTATATC TTATACTCAT ATAGTTACAT 
    ATAGAAATCA CACCTCTATG GTTTTATATA AGTAACATTC ATATATATAT 
    CTTAGAAGAT CTTTCAAAGT AGACTTACAC TCAGCTTGTT CCATAGTCCA 
    ATAACTCCCA CCTGAACGGT TGAAACACAT AGAGCACTTC CGGGCAACTC 
    TTAAACAGAA GTGCCACACA GACGCAAACC GCAGCAATCG CCACCATTGA 
    CAAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19340876 [Map]; Strand: w
      • AT2G47070.1 - [+] show detail - squamosa promoter binding protein-like 1
        Distance: 7; Region: intergenic
      • AT2G47090.2 - [+] show detail - zinc ion binding;nucleic acid binding
        Distance: 375; Region: intergenic
    Flanking Genome Sequence: ET13883 - 5-prime edge 
    ATTTCCATCC TACTTTCTCC CTGTACTAGC CTTCTTTTAA AGTTTCCCTT 
    GAATTCATAC TTTTGAAGCT TTTTGGTACA TCAGATTCAT CACTTGACAA 
    ATAGATACAT TAATTTATGA CTTGGAATCT TGGATGTCCA TTCCAACACT 
    CTGATGACTT GTTCATTCTC TGGTACATCT AATGAGTTGG GGAGAAGAAG 
    AAGCTAGAAT CCGAATCTCA CAAGTAACAC AACCCAAGTA AGCTCATTCC 
    CGGGCCTAAG CCCTAATTCC ATCTATTTCC TCGTTGAAGG TTATGGTGAA 
    GGCTATGTCG TTTACGATAT CGCTACTAGA ACCCCACGTT CCTTCAATCC 
    CAAGTCTTTT CAGCTTTCTC GGATATAGCT GATTCACCTA ATGGCAAGGT 
    TTACGTGCTT CCTGATTGGG TTCCTCACTG GAATCCTCCA TCTCCTCTCT 
    AGTTGTTGTG TTTATTGCTT TTCAAAAGCT TAATGAGAGG CCTTTTATTT 
    TAATATCAAC AAGGATCGAA CATAAATGCT CATAAAAAAA TATCTGATAA 
    CTTAAGCTAG TCATTACATC AAAAGACACG AACACTATAT GACTATTTGA 
    TCCTTAGACT TGGTTCATCT GTGCAAAAAA ATCTTTTTAC TAGACGAAGA 
    GTTTTGCACT TCCTCTCTTC CAGCACCACG AAGTGGCAAT CCACCGGGAG 
    AGTTCTGGCT CCTTTTGGAG TTATCGTTCT TAGGTTCTGG TTCAGGCTCT 
    GGGTTAGAAT TCCTAAGATC TAGTACTG

AT2G47070.1

Model type
Protein coding
Short Description
squamosa promoter binding protein-like 1
Curator Summary
member of SPL gene family, encodes DNA binding proteins and putative transcription factors. All have the SBP-box, which encodes the SBP-domain, required for and sufficient for interaction with DNA.
Computational Description
squamosa promoter binding protein-like 1 (SPL1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 12 (TAIR:AT3G60030.1); Has 940 Blast hits to 885 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 930; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47090.2

Model type
Protein coding
Short Description
zinc ion binding;nucleic acid binding
Computational Description
zinc ion binding;nucleic acid binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G62240.1).
Link
InterPro Scan - TAIR