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ET13888

CSHL Arabidopsis genetrap mutant lines

Original: ET13888

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13888

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 268464 [Map]; Strand: c
      • AT4G00630.2 - [+] show detail - K+ efflux antiporter 2
        Distance: -433; Region: promoter
      • AT4G00630.1 - [+] show detail - K+ efflux antiporter 2
        Distance: -414; Region: promoter
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: -562; Region: promoter
    Flanking Genome Sequence: ET13888 - 5-prime edge 
    GTGTGCTCTT TTTAGTCTTC AACACGATAA TCCCATGATA AAATCCTTGT 
    GTACTTGGTT TAAGTTGTGA CTTGTGAGTA CTTTTAGTTT TAGGTGGGAA 
    AGAAATGAAA ACATTGTGGG CTGACGGTAC TAGGTAAGCC CAATAAGGAA 
    AACGACTCTA CGCAATCAGA GAAGGTCGCC AAGCGTACGG TCGTTCCCTC 
    ATCAAAGAAC AACGTCGCTC GCTTTTTTAT TAATAATAGT TCACAAATAT 
    TAAAACACAT TTGGAAAATG ACTTGGTCAC GCGCACCCAA AGGCAGTGCA 
    AAACTAAACG AGCCACCTAT CAGTAAAACG TAGCCGTTGA TTCGAACCAC 
    GTGTATATTG CACGCACCAC ATGCGAGTAC GAGTAAGAGA GTTGGTGGTA 
    TATTCACGGC ATATTATATG TGCACGAATT GAATCTCTCT AAGCACGAGA 
    GGGCATTTTC GTAACTTTCT TATAAAAAAT CCTACCACGA GTGATTGGGC 
    AAAAAAAACT GAAAGAGGAA AGAGAGAGTT GGACGGAAAA TCTGAAAACC 
    GC

AT4G00630.1

Model type
Protein coding
Short Description
K+ efflux antiporter 2
Curator Summary
member of Putative potassium transporter family
Computational Description
K+ efflux antiporter 2 (KEA2); FUNCTIONS IN: potassium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport, metabolic process, transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153), K+/H+ exchanger (InterPro:IPR004771), NAD(P)-binding domain (InterPro:IPR016040), Regulator of K+ conductance, N-terminal (InterPro:IPR003148); BEST Arabidopsis thaliana protein match is: K+ efflux antiporter 1 (TAIR:AT1G01790.1); Has 34304 Blast hits to 27699 proteins in 2887 species: Archae - 928; Bacteria - 15112; Metazoa - 9897; Fungi - 1524; Plants - 1371; Viruses - 95; Other Eukaryotes - 5377 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00630.2

Model type
Protein coding
Short Description
K+ efflux antiporter 2
Curator Summary
member of Putative potassium transporter family
Computational Description
K+ efflux antiporter 2 (KEA2); FUNCTIONS IN: potassium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport, metabolic process, transmembrane transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K+/H+ exchanger (InterPro:IPR004771), Cation/H+ exchanger (InterPro:IPR006153), NAD(P)-binding domain (InterPro:IPR016040), Regulator of K+ conductance, N-terminal (InterPro:IPR003148); BEST Arabidopsis thaliana protein match is: K+ efflux antiporter 1 (TAIR:AT1G01790.1).
Link
InterPro Scan - TAIR

AT4G00650.1

Model type
Protein coding
Short Description
FRIGIDA-like protein
Curator Summary
Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI.
Computational Description
FRIGIDA (FRI); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 841 Blast hits to 841 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR