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ET13910

CSHL Arabidopsis genetrap mutant lines

Original: ET13910

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13910

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7441596 [Map]; Strand: c
      • AT1G21250.1 - [+] show detail - cell wall-associated kinase
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET13910 - 3-prime edge 
    ATGAAACGGT AGAGGTTTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    TTATTGACGG CCAAGTGATG AACGAGGATA ATCTGAGGGA GATCCAGGAA 
    GCTGCAAGAA TTGCTGCAGA GTGTACAAGG CTAACGGGAG AGGAAAGGCC 
    AAAGATGAAA CAAGTAGCTG CAGAGCTAGA AGCCTTGAGA GTCAAAAAAA 
    CCATACGTAA GTGGTCGGAT CAGTACCCTG AAGAGAACGA ACACTTGATT 
    GGTGGTCACA TCTTGTCAGC ACAAGGCGAA ACCAGTAGCA GCATTGGCTA 
    TGACAGCATC AAGAATGTAG CAATATTGGA CATTGAAACT GGCCGCTGAT 
    ATTACAAATT CACATGTATT TCTTTTGTTT GTAAGAAAAA AAAAACTACC 
    TCTTTGTGGC TTCATAAAAA AGGCTTTGCT TCATTAAAAA GGATTTGAAA 
    AAATTTTTAT AAATCATCAA TAACCATGTT TGTAATTCCC ATGGGAATAC 
    TAACCAGAAG CCAATCTGGT TATAGGCAAA CTTAAAAACT CTTTTGCAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11114304 [Map]; Strand: w
      • AT4G20725.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET13910 - 5-prime edge 
    TTATCCGTAC TTACTCTCCC GGGGATAAAA CTAGGTTGAG CCGGACCAAT 
    CAGATTTGTG ATTAAAGGGT TCAGACGCTC TACCATCGTC TTAGTGATGA 
    TCTTGAAAAG CACATTGCAT AGGCTGAGGC TCCTCTTTTT AACAAGCCCC 
    AGCTCACTTC GTTAGGGTCT GTTTTCTCGG AGATACTGCC GTTTATCTGC 
    AGAAGACTGA CAAAATACAG ATCGATCTAT ATCCGATCTG TTGACCTCGG 
    AATCAAAGCA TCAACTGAGC CCCGGGGGTT ATCTTTCAAT AGAGACCGAC 
    CTCATCCAAT TCCGAGCTGT TTACT

AT1G21250.1

Model type
Protein coding
Short Description
cell wall-associated kinase
Curator Summary
cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component such as oligogalacturonides.
Computational Description
cell wall-associated kinase (WAK1); FUNCTIONS IN: kinase activity; INVOLVED IN: cell surface receptor linked signaling pathway, response to virus, defense response to fungus, response to salicylic acid stimulus; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EGF-like calcium-binding (InterPro:IPR001881), EGF-like, type 3 (InterPro:IPR000742), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-type aspartate/asparagine hydroxylation site (InterPro:IPR000152), EGF calcium-binding (InterPro:IPR013091), EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: wall associated kinase 3 (TAIR:AT1G21240.1); Has 130372 Blast hits to 120319 proteins in 4569 species: Archae - 123; Bacteria - 13482; Metazoa - 56283; Fungi - 9380; Plants - 33196; Viruses - 438; Other Eukaryotes - 17470 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20725.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.2e-31 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR