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ET13915

CSHL Arabidopsis genetrap mutant lines

Original: ET13915

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13915

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6001820 [Map]; Strand: c
      • AT3G17530.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G17540.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: -963; Region: promoter
    Flanking Genome Sequence: ET13915 - 5-prime edge 
    CTTTCTCCCT GCCCAAATGT AGATTCTGCT CCTAAGTCCA TCTTTCGTGT 
    CTACGTCAGA ACACACTGCC ACTTTATTCT CCTCGTCCAA CAAGAAGCTT 
    GTCACATTCA CTAGACATGG TAAATTAAAT TTACCATAAT CCACTGTTAA 
    GAGAAAGTTG CTCCACGACA AGTCTTTGGC CTCATCAATC TTATTGGTGA 
    CCCAAATCTT CATCCTCACT CGA

AT3G17530.1

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G17540.1); Has 1887 Blast hits to 1831 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1885; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G17540.1

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G17530.1); Has 1827 Blast hits to 1773 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1825; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR