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ET13916

CSHL Arabidopsis genetrap mutant lines

Original: ET13916

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13916

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 295412 [Map]; Strand: c
      • AT3G01820.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G01830.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -642; Region: promoter
      • AT3G01830.2 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -642; Region: promoter
    Flanking Genome Sequence: ET13916 - 3-prime edge
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGCCAC 
    AGAAAGAGAG AGAGCTTAAA GAGAGGGGTT TGAACGGAGA CGGAGGGCCG
    AGGTTTATGG GACAGCTGAC ACTCTCTCTT TTCTTTCTTT CTTTTTTAAT
    TGATTGCCAC TCCTTTACTC ACGAATCCAC GAAATTGCCA CTGCCCACAT
    GTCCGCTTCC TATTTGTCGC TCAGATAATT ATTTGAGTGA GAATTGAATG
    GACAACACTG AAACACGTTT AATAAGGCCC AAACGTCTCT TAGCCCAGAC
    TTGGCCCACC TAATTATATT CAACGACCGA AATTGTCAAC CATTGTTAAC
    CACCCAAAGA AATAAATAAA AAGTAAAGAT ACTTATTCAC ATGAAGCCTG
    ACAAGTTTCT TTTTATAGAA GACTAGTCAA CGTCAACGGA AACTTCGTCG
    TCATATAATA TTTTAGTAAC GAAATAACGA TGAACTTTAC TTGTTGTTCA
    TAATAAAAAC AGAAATAGAA ACTTGTCAAC ATAGAAGCCG CGGGAACAAA
    GCGTTTCTTC TTTTGTACGT AGCGCCGTAA ACAAATCAAC AAGTCCACAA
    TCCGCATGTG TTAAAAGTAC GGTCTTATAT TTCAACGTTT TTCAAACGTC
    TCTCCTTCAT CTTCTATATA TTTTGCCAAA CTGAACAAGT AATAGTCTTC
    AAACTATAAT CATTTTCTCC TATCTCTCGC TCAAGTCTTC TTCATCGATC
    TTCTAT

AT3G01820.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: adenosine kinase (TAIR:AT2G37250.1); Has 9469 Blast hits to 9393 proteins in 2915 species: Archae - 95; Bacteria - 5951; Metazoa - 891; Fungi - 419; Plants - 430; Viruses - 0; Other Eukaryotes - 1683 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01830.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin-like 38 (TAIR:AT1G76650.3); Has 5650 Blast hits to 5606 proteins in 833 species: Archae - 0; Bacteria - 6; Metazoa - 2238; Fungi - 938; Plants - 1778; Viruses - 0; Other Eukaryotes - 690 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01830.2

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: calmodulin like 37 (TAIR:AT5G42380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR