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ET13930

CSHL Arabidopsis genetrap mutant lines

Original: ET13930

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET13930

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7672139 [Map]; Strand: c
      • AT2G17650.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET13930 - 3-prime edge 
    ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGCGGA GGAGCCCCAA 
    CTGTGTTGAA TATGATTGTG AACTATACTG TGACTGAACA TAAACCGCTT 
    CCTCACAGGG TTGAGATCAT GACAGGTGGG TCACCGCCTC TACCGCAGAT 
    CCTGGCTAAG ATGGAAGAAT TAGGTTTCAA TGTGTCTCAT CTTTATGGTT 
    TGACAGAGAC ATACGGTCCA GGGACACATT GCGTGTGGAA ACCTGAATGG 
    GATTCTCTTT CGTTGGTGGA GAGAACTAAG TTGAAGGCTA GACAAGGAGT 
    GCAGCATTTG GGTCTAGAAG GGCTCGATGT GAAAGATCCG CTGACAATGG 
    AGACTGTCCC TGATGATGGT TTAACCATGG GTGAGGTTAT GTTCAGAGGA 
    AACACTGTGA T

AT2G17650.1

Model type
Protein coding
Short Description
AMP-dependent synthetase and ligase family protein
Computational Description
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: acyl activating enzyme 1 (TAIR:AT1G20560.1); Has 73858 Blast hits to 68450 proteins in 3463 species: Archae - 1190; Bacteria - 48268; Metazoa - 3206; Fungi - 2755; Plants - 2089; Viruses - 1; Other Eukaryotes - 16349 (source: NCBI BLink).
Link
InterPro Scan - TAIR