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ET13931

CSHL Arabidopsis genetrap mutant lines

Original: ET13931

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13931

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12023071 [Map]; Strand: w
      • AT1G33140.1 - [+] show detail - Ribosomal protein L6 family
        Distance: -204; Region: promoter
    Flanking Genome Sequence: ET13931 - 3-prime edge
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGT 
    CAGAAGTGGG TCAGAAGTGG GTTTAAAAGT GGGTTTTACT AAGAGACTAA
    TCAGAAGTGG GTTTAAAAGT ACACCCATTC CTAGCCCAAT AAAACTGAAG
    CCCAGGAAAC ACCCAAAATA TATTATTGGC AATAACAGGT CATATATATG
    CCAATTAATA TAATCAAGTA CCAATAGAAT GCATGCTATT CGGCTTTTTC
    TGGATTCGGG TAATTCGAAT TAGAGAGTTT AGTATCCTTT CAGATGGATA
    AGATTAGATA TTTATGTATT CGGGTTGATC GGGTTCAGAT CAAATAGAGG
    AGTTTAGGAT TTAATTGAGT AAATATATAT AAAAATTGGT TCAGTTTGGT
    TCGGTCTATC AAGTTTAGGT CGAAAGAAAA CACCATTGTC GAAAGAAAGC
    CGTAGCAAAC CACCACTGAA TTAGCCACAG ATCGAGTCAC CGTACCAAAC
    GCAAACAACA TATTATTTTC TCTTTGCTCT CTCTTCGATT TGCTCTCTCT
    CTCACGACGG CTAAAGGCAG AAACCCTAGT TTATGAATCG TCGGAAGCAA
    TTTAAAGATA GAGACGC

AT1G33140.1

Model type
Protein coding
Short Description
Ribosomal protein L6 family
Curator Summary
Encodes ribosomal protein L9. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.
Computational Description
PIGGYBACK2 (PGY2); FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: adaxial/abaxial pattern formation, translation; LOCATED IN: cytosolic large ribosomal subunit, vacuole, large ribosomal subunit, membrane, chloroplast envelope; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site-2 (InterPro:IPR002359); BEST Arabidopsis thaliana protein match is: Ribosomal protein L6 family (TAIR:AT1G33120.1); Has 1644 Blast hits to 1643 proteins in 495 species: Archae - 312; Bacteria - 169; Metazoa - 422; Fungi - 179; Plants - 339; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Link
InterPro Scan - TAIR