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ET13933

CSHL Arabidopsis genetrap mutant lines

Original: ET13933

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13933

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 207955 [Map]; Strand: w
      • AT1G01570.1 - [+] show detail - Protein of unknown function (DUF604)
        Distance: 520; Region: intergenic
      • AT1G01580.1 - [+] show detail - ferric reduction oxidase 2
        Distance: -1440; Region: intergenic
    Flanking Genome Sequence: ET13933 - 3-prime edge 
    GTAGAGGTAT TTACCGACCG TTACCGACCG TTTTCATCCC TACTGGTTCG 
    TGTTCGGTTT TGGTAGGTTC GCCGGTTCGT GACCGTATTA CGTACGTGTG 
    TAAAATACAC GTGTCAGATG TCGGCTTATG TGTGTCAGTG TCGCCTCCGT 
    CCACGAAATC TCACGCGTGT CAACAAAATA TGTCAATTTT AAAGCCAACG 
    AGGAAAAGAT GAATCAGGCC CATTCCCATT CATCTTCTTT CTTCCTCATC 
    ATCATTACAT TCATCTCACT CGA

AT1G01570.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF604)
Computational Description
FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: fringe-related protein (TAIR:AT4G00300.1); Has 558 Blast hits to 547 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 169; Plants - 281; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01580.1

Model type
Protein coding
Short Description
ferric reduction oxidase 2
Curator Summary
Encodes the low-iron-inducible ferric chelate reductase responsible for reduction of iron at the root surface. It is likely to be the major Fe(III) chelate reductase in Arabidopsis iron metabolism. Coordinately regulated with IRT1, the major transporter responsible for high-affinity iron uptake from the soil, at both transcriptional and posttranscriptional levels. Steady state mRNA levels are regulated by several metals. Its transcription is regulated by FIT1.
Computational Description
ferric reduction oxidase 2 (FRO2); CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Ferric reductase, NAD binding (InterPro:IPR013121), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: ferric reduction oxidase 1 (TAIR:AT1G01590.1); Has 2711 Blast hits to 2707 proteins in 388 species: Archae - 5; Bacteria - 307; Metazoa - 560; Fungi - 1180; Plants - 483; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Link
InterPro Scan - TAIR