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ET13941

CSHL Arabidopsis genetrap mutant lines

Original: ET13941

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13941

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2507396 [Map]; Strand: w
      • AT4G04925.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 610; Region: intergenic
      • AT4G04930.1 - [+] show detail - fatty acid desaturase family protein
        Distance: -1737; Region: intergenic
    Flanking Genome Sequence: ET13941 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAAATCG 
    GAGTTAGGGG TTAAGGTTTT TTTTTTGCGA CTTTGGATGG AATTTCTGCA 
    ATTGGGGCTC TTTCTTAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2507446 [Map]; Strand: w
      • AT4G04925.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 660; Region: intergenic
      • AT4G04930.1 - [+] show detail - fatty acid desaturase family protein
        Distance: -1687; Region: intergenic
    Flanking Genome Sequence: ET13941 - 5-prime edge 
    TTTCATCCTA CTTTCTCCCT GCTCCGATTT GTTCTTAAAA ATTGAAATTG 
    ATAAACTTGG AACACAAATC GAGCTCTTTA AACGCCTGGG ATTCAAGGAA 
    TTACGATTCC AGTACTCAAA TCGAATTGCA AAAGAGTCTA ATCAGACCGA 
    AAATAAGGAA ATCGAGACAA AGAAAGCATA ATTTTGAACC AAAAACAATC 
    TGGCCAAAAG CTAAAAGAAA CACCAGAGCT ATATGGTGAA TTTCTAGAAC 
    TTAGCTAGCC CACCGCTACT GTAGAAGCCA ACGGAAGCCA GACACAAGCC 
    AACCACCACC GTAAAAGAGA AACAAGATGG TGTCAGAAGA GAGCCGATCA 
    AACGTTGTCG AAAAGACAAA CGTTAACGGA CAAGAGCCAG ACATCTATGC 
    TGAGAAAGCC ATAGGATTCT GTTCAGAAGC CATCGTGAAC GATCAACAGA 
    TGC

AT4G04925.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04930.1

Model type
Protein coding
Short Description
fatty acid desaturase family protein
Curator Summary
Encodes a sphingolipid delta4-desaturase, involved in sphingolipid biosynthesis. Specifically expressed in floral tissues. Knockout mutants were devoid of sphinga-4,8-dienine in floral tissues.
Computational Description
DES-1-LIKE; FUNCTIONS IN: oxidoreductase activity, sphingolipid delta-4 desaturase activity; INVOLVED IN: sphingolipid biosynthetic process; LOCATED IN: integral to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sphingolipid delta4-desaturase, N-terminal (InterPro:IPR013866), Fatty acid desaturase, type 1 (InterPro:IPR005804), Sphingolipid delta4-desaturase (InterPro:IPR011388); Has 703 Blast hits to 697 proteins in 257 species: Archae - 0; Bacteria - 174; Metazoa - 227; Fungi - 120; Plants - 36; Viruses - 3; Other Eukaryotes - 143 (source: NCBI BLink).
Link
InterPro Scan - TAIR