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ET13943

CSHL Arabidopsis genetrap mutant lines

Original: ET13943

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13943

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9189 [Map]; Strand: c
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon4 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: ET13943 - 5-prime edge 
    TACTTTCTCC CTGGTCCGGA TTAAAAACTC ATGAGGAGTT TGATGCTACA 
    GTAGTTAAGC ATCATTCAGG AACTCCAGGA CAATATGAGG ATTATGTATC 
    TGGGAAGAGA TCTGAAGTCT TAAATCCATC TTTAAAGGTG CCTCCAACAA 
    AGTTTCAGAC TGCTGGTGGA AAATCATTGT CAGTGTCAGC TGAGGCGTTA 
    AAACGTGCCA GAAACCTTCT TGGTGACCCT GAATTAGGGT CTTTCTTTGA 
    TGATGTAGCT GGAGGTGATC AATTTTTTAC ACCAGAGAAA GATGAAAGGT 
    TAAGTGATAT TGCTATAAAC AATGGAAGTG CCAACAGAGG TTATATTGCT 
    CATGAAGAAA AGACAAGCAA CAAACATACG CCAAATAGTT TTGTATCTCC 
    TCTTTGGTCA TCTTCAAAGC AATTTAGTTC AGTCAACTTG GAGAACCTAG 
    CTTCAGGGGG TAATTTGATC AAGAAATTTG ATGCGGCTGT TGATGAGACC 
    GATTGTGCTC TGAATGCTAC ACATGGACTA TCAAATAACA GGTCTTTGGC 
    ATCAGATATG GCAGTGAATA ATTCCAAGGT AAAA

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR