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ET13954

CSHL Arabidopsis genetrap mutant lines

Original: ET13954

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13954

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9550848 [Map]; Strand: c
      • AT4G16960.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13954 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGCGAT 
    TATGCAGCTT CTCACGATGC CGTGATCCAT GAATGTATTG ATTGATCTGC 
    GGTCGAGCGC CTCGATTAGA TGGTTGAGGA ACGTTTTGCG AACATCTACC 
    CCACTGAAGC TTGGGAAAAC GTCGTATCTC CGGCTACTAG GAGAAGAAGA 
    AGAAGAAGCC ATGGGAGACG ATAGAGAGAA CTCAGAGAAG AGACGAAGAT 
    TTGTAAGAGA AGTAAATTAG CAATACATAT TATGAGTAAG AGAGTAAGAG 
    AGAAAGAGAG GAGAAACTTG GTCTTCCTTT CCTCGAAGAC TTGGTCTTCC 
    ACTTGATAGA AGACTTACTA TACAAATATT TTTTTAAGTG ACTAAAATCA 
    AACCACCTAA CAAGACAATT GAGACGTACT AAACTAATAT GATACAGAGG 
    TTTTACTATA CAAAGATACT TTAAAAGATT GATTTTGTGG TTGTCAATTG 
    TCACTGAATT ACTACTAAGT CATTGTAAAA GAAAGAAATA AGATTATAAT 
    TTATCATAAT TTCGAGGCAA ATAGACAAAA ACTTCAATTT TGTTTCCTCT 
    ACAAAAGATA TTTTGAAGAC TCACACTATC TAATTTGCTT AAATACTCTT 
    TTAGTTTTCC AGAATTCAGT GGTGTGGACA GTGGAGTGAA GATGGTTAGA 
    TATATTTTTC TTATTTACTT TTACAATTGT AATATTAGTT TAGAGTTTGG 
    CTTACTGCGT CAGCAACCAT TGTGGGCTGC TGTTTAAGGA GCATTTGGTT 
    T

AT4G16960.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 19980 Blast hits to 13439 proteins in 492 species: Archae - 4; Bacteria - 689; Metazoa - 980; Fungi - 44; Plants - 17549; Viruses - 10; Other Eukaryotes - 704 (source: NCBI BLink).
Link
InterPro Scan - TAIR