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ET13957

CSHL Arabidopsis genetrap mutant lines

Original: ET13957

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13957

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 162603 [Map]; Strand: w
      • AT2G01330.2 - [+] show detail - nucleotide binding
        Distance: -1702; Region: intergenic
      • AT2G01340.1 - [+] show detail - At17.1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal pro...
        Distance: -1351; Region: intergenic
    Flanking Genome Sequence: ET13957 - 3-prime edge 
    ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAACAGC TGACACAATA 
    TCTCCACATG TACGTTAGAG AGGGTTTCCA TAAATCATCA CTAATCATAG 
    TTTGAATTAA CTTGACAGTC CGATCCGTAC AATGTTAAAA GTCAGTCGGA 
    AATATGTAGC TTTGAATCTT TGTTTTTAAT GTTTAGGCTA CAGTTATCGA 
    CTAATTCAAA AGATTTACCG TGAACTTTTG ATCACTACAT ACAATAATAA 
    TGGGCCTATT GTCTAGATAT GATGTGTCTA AT

AT2G01330.2

Model type
Protein coding
Short Description
nucleotide binding
Computational Description
nucleotide binding; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G18060.1).
Link
InterPro Scan - TAIR

AT2G01340.1

Model type
Protein coding
Curator Summary
Encodes a protein whose expression is responsive to nematode infection.
Computational Description
At17.1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, response to nematode; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1); Has 110 Blast hits to 110 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR