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ET13964

CSHL Arabidopsis genetrap mutant lines

Original: ET13964

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13964

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 6026581 [Map]; Strand: w
      • AT2G14220.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET13964 - 3-prime edge 
    GAAACGGTAG AGGTATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAA 
    ATGGAACCGA GTTCACAAGT TTGGCAAACT ATTTTCGACA GCAAGGGATT 
    CTTTAAGAGA CTTCCTGTGT GGGTACACCA CAACAAAATT GAAGAGCCGA 
    ACGCAAACAC CGACACATTC TGAATGTGGC AAGAGCATTG CGCTTTCAAG 
    GACACTTACC AATCCAATTT TGGGGTGAGT GTATCCTCAC AGCTGGTTAT 
    TTAATTAATC GTATTCCTTC ATCAGTTCTG AATGGTCTAA CACCATATGA 
    GAAATTGTAT AAGAAAGAGC CCGATTATAC ACATCTCAAA GTATTTGGGA 
    GCTTGTGCTA TGCTCATAAT CAAGGTCATA AGGGAGACAA GTTTGAATCG 
    AGAAGTTGAA AGTGTGTGTT TGTTGGCTAT CCATATGGCA AAAAGGGTTG 
    GAGGCTATAT GATTGCGAAA CAGAGGAGTT TTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8227563 [Map]; Strand: c
      • AT3G23120.1 - [+] show detail - receptor like protein 38
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13964 - 5-prime edge 
    CTTTCTCCCT GTCCTTGGCA AATATCACAA ACCTCGAGAC GTTAGACCTA 
    TCGCGAAATA ACTTGTCAGG TGAAATTCCT CGAAGTCTCG GGAACCTCTC 
    GTTTCTGTCC AACATCAACT TCTCCCACAA TCATCTACAA GGATTCGTGC 
    CACGGAGCAC ACAGTTTGGA ACTCAAAGTT GTGCTTCATT CGTGGGTAAT 
    CCTGGACTCT ATGGCCTCGA TGAAATTTGT AGAGAAAGCC ATCATGTTCC 
    TGTTCCTACA TCTCAGCAAC ATGATGAGTC TTCTTCAGAA CTAGAAGAGC 
    CAGTGCTGAA CTGGATAGCA GCCGCGATAG CCTTTGGACC TGGTGTGTTC 
    TGTGGATTTG TGATCGGACA CATCTTCACT TCATACAAAC ACTTGTGGTT 
    TATAGCTCGT TAAGCTCAAC GGTTTCGTCA AGTTTGTACT CCCGTAACTA 
    GTTGGTCAAG TGTTTGATAT TTTTAATTTT CTATTTTGTG GTTTTTAATA 
    AATATCGTTG TTTGACCAAA TAAAAAAGGA AGTAAAAGAT TCTAGCTATT 
    TTATACTTTC ACAGATATGA GATTCACAAA ACGTACACTG AATGGAAACT 
    CTGACCTGAA AATCTCACGG CAAGGGAATC TCTTAGATTC GTGCAGCTCT 
    CTTCCCGCCA CGGGGTTTGC TGCTTGTTGC CTTT

AT2G14220.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.6e-167 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR

AT3G23120.1

Model type
Protein coding
Short Description
receptor like protein 38
Computational Description
receptor like protein 38 (RLP38); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 37 (TAIR:AT3G23110.1); Has 120242 Blast hits to 33265 proteins in 1172 species: Archae - 42; Bacteria - 8485; Metazoa - 29672; Fungi - 1389; Plants - 71311; Viruses - 22; Other Eukaryotes - 9321 (source: NCBI BLink).
Link
InterPro Scan - TAIR