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ET13966

CSHL Arabidopsis genetrap mutant lines

Original: ET13966

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13966

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18845008 [Map]; Strand: w
      • AT1G50840.1 - [+] show detail - polymerase gamma 2
        Distance: 449; Region: intergenic
      • AT1G50850.1 - [+] show detail - transposable element gene
        Distance: 2402; Region: intergenic
    Flanking Genome Sequence: ET13966 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATATTTA 
    GTAGCATATA TGTAAAAACA AGAAAGCAAA AAACTCAACA AAAGGATACA 
    AAAAAAGGGA GGTAGTGATG AAGAAGCTTA GAAGCTTGAT GAGGCCAAAA 
    TTACCAAGAC AAATTGAACT CAAAGTGAAT CGGCGGCAAT ATGAGAGAAT 
    TGGCCTAGTA TAAACGTACG TAGTTGAAAA CCGTTTGCCT AGGTTTTAAA 
    TGCCACAGAG CTGATCAGTA TCAGTGTAGT GCAGCCAATC TGATCCGATG 
    CATGGTCGCA TATAATGCTT GCTAATTTGA AAGACATTTT CAATCTCATA 
    CTAGGTGCTA TGTATGAGCT TGTCAAGGGT ATTAAAAAGA TGTCAAAGAT 
    TACGTGAACA CAGGAAAGTT AAAATCATTT ACATACATAC GCTCTCTGAA 
    AAAGAATCAA TGCAAAAGAA AGATAAAAAG CACATCTCCT AATTTTTCAT 
    TGATTTTGTT TATATAATCT ATTCAAATTC TCATTTTACA CAAAGCCATC 
    CACA

AT1G50840.1

Model type
Protein coding
Short Description
polymerase gamma 2
Curator Summary
DNA Polymerase gamma2. Dual targeting to mitochondria and plastids due to alternative translation initiation.
Computational Description
polymerase gamma 2 (POLGAMMA2); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed DNA polymerase, family A, palm domain (InterPro:IPR001098), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA polymerase A domain (InterPro:IPR002298), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: polymerase gamma 1 (TAIR:AT3G20540.1); Has 11974 Blast hits to 10011 proteins in 2572 species: Archae - 0; Bacteria - 6712; Metazoa - 149; Fungi - 0; Plants - 122; Viruses - 286; Other Eukaryotes - 4705 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G50850.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (Ptta/En/Spm), has a 9.6e-44 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR