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ET13994

CSHL Arabidopsis genetrap mutant lines

Original: ET13994

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13994

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15359486 [Map]; Strand: c
      • AT2G36640.1 - [+] show detail - embryonic cell protein 63
        Distance: -874; Region: promoter
      • AT2G36650.1 - [+] show detail - unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Arch...
        Distance: -429; Region: promoter
    Flanking Genome Sequence: ET13994 - 3-prime edge 
    AACGGTAGAG GATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACACT 
    AACGTGAGTA CCTTAAGATC TCAAGTATAT AGTTAAGATC AGATCAAATC 
    AGAAACACTT AGTTTGAGTT TCGATTTGAT CAACCATATA ATAATATATG 
    GAACTTCTAG CTAGCATCAT GGCTTTCATA ATGTGTAGGT ACGTGTGAGT 
    ATGAGTACAC ACGTACGTAT GTCGTGTAAG TGGAGAATCC GATGCCCAAA 
    CGAGTAAGCA AGCAAAAGCA ATGGTCAAAA AGCAACCGAT CTCAATTAAT 
    TATCTTATTG TAAAAACTCA ATAAAAAGTT AAGGGAAAAG AATAATCTTA 
    CAAGACATGT ATCCTCCACA ACAAAAAGAG GACTGTATAA AACTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15359488 [Map]; Strand: c
      • AT2G36640.1 - [+] show detail - embryonic cell protein 63
        Distance: -876; Region: promoter
      • AT2G36650.1 - [+] show detail - unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Arch...
        Distance: -427; Region: promoter
    Flanking Genome Sequence: ET13994 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACACTAA 
    CGTGAGTACC TTAAGATCTC AAGTATATAG TTAAGATCAG ATCAAATCAG 
    AAACACTTAG TTTGAGTTTC GATTTGATCA ACCATATAAT AATATATGGA 
    ACTTCTAGCT AGCATCATGG CTTTCATAAT GTGTAGGTAC GTGTGAGTAT 
    GAGTACACAC GTACGTATGT CGTGTAAGTG GAGAATCCGA TGCCCAAACG 
    AGTAAGCAAG CAAAAGCAAT GGTCAAAAAG CAACCGATCT CAATTAATTA 
    TCTTATTGTA AAAACTCAAT AAAAAGTTAA GGGAAAAGAA TAATCTTACA 
    AGACATGTAT CCTCCACAAC AAAAAGAGGA CTGTATA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15359426 [Map]; Strand: c
      • AT2G36640.1 - [+] show detail - embryonic cell protein 63
        Distance: -814; Region: promoter
      • AT2G36650.1 - [+] show detail - unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Arch...
        Distance: -489; Region: promoter
    Flanking Genome Sequence: ET13994 - 5-prime edge 
    TTTCTCCCTG CGTTAGTGTA TATCATATTT ACGACAATCA TGTAGAAAAC 
    GTGACCGATT TGGATGATTC GGCATCAAAT GCGCGTCAAC AAAGTTGTCG 
    GAGAAATAAT AAAAAAAGGA CGTACCTAAT TAAGTATAAA AGTAATCTAT 
    GTGAGAACAT GATTAACGTG ATTTATTTAT TTTTGACAAA AAAAAAAAGT 
    AAGGGGGACA AATAGAAATT TTTAACAAAA AAAAAAGTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15359427 [Map]; Strand: c
      • AT2G36640.1 - [+] show detail - embryonic cell protein 63
        Distance: -815; Region: promoter
      • AT2G36650.1 - [+] show detail - unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Arch...
        Distance: -488; Region: promoter
    Flanking Genome Sequence: ET13994 - 5-prime edge 
    CTTTCTCCCT GCGTTAGTGT ATATCATATT TACGACAAAT CATGTAGAAA 
    ACGTGACCGA TTTGGATGAT TCGGCATCAA ATGCGCGTCA ACAAAGTTGT 
    CGGAGAAATA ATAAAAAAAG GACGTACCTA ATTAAGTATA AAAGTAATCT 
    ATGTGAGAAC ATGATTAACG TGATTTATTT ATTTTTGACA AAAAAAAAAA 
    TTTAGGGGGC CTAAAAAAAA TTTTTAAAAA AAAAAAGAGT TGTCTTTTCG 
    GTAAAAAAAA AAAACTCTGG GGCAACCCGG AATAAGCGGG CAAATAAAAA 
    AAAATTGGAA AAAAAACCCA AACTTTGGCA AGGAACTTTT TGGAAACCCC 
    CCCCAAAAAC CGTCAAAAAC TCAAAATTAT TTGGAAACCC GATTTGATCA 
    AAAAACGGCT CTTCCCAAGG ATAAACTGGC GCCCTTATTT TTCAAAAAGG 
    CTTGTTCCCA AGTTTTTGAG GTGGAGGCAA AACCTTCCAA AAAACGGGGG 
    G

AT2G36640.1

Model type
Protein coding
Short Description
embryonic cell protein 63
Curator Summary
Encodes putative phosphotyrosine protein belonging to late embryogenesis abundant (LEA) protein in group 3 that might be involved in maturation and desiccation tolerance of seeds. RFLP and CAPS mapping place it on chromosome 4 but the nucleotide sequence maps it to chromosome 2.
Computational Description
embryonic cell protein 63 (ECP63); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit, seed; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein, putative / LEA protein, putative (TAIR:AT3G53040.1); Has 29213 Blast hits to 16834 proteins in 2229 species: Archae - 326; Bacteria - 11175; Metazoa - 5508; Fungi - 2029; Plants - 3175; Viruses - 194; Other Eukaryotes - 6806 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G36650.1

Model type
Protein coding
Computational Description
unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR