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ET14011

CSHL Arabidopsis genetrap mutant lines

Original: ET14011

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14011

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 6026578 [Map]; Strand: w
      • AT2G14220.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET14011 - 3-prime edge 
    AACGGTAGAG GATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAAATG 
    GAACCGAGTT CACAAGTTTG GCAAACTATT TTCGACAGCA AGGGATTCTT 
    TAAGAGACTT CCTGTGTGGG TACACCACAA CAAAATTGAA GAGCCGAACG 
    CAAACACCGA CACATTCTGA ATGTGGCAAG AGCATTGCGC TTTCAAGGAC 
    ACTTACCAAT CCAATTTTGG GGTGAGTGTA TCCTCACAGC TGGTTATTTA 
    ATTAATCGTA TTCCTTCATC AGTTCTGAAT GGTCTAACAC CATATGAGAA 
    ATTGTATAAG AAAGAGCCCG ATTATACACA TCTCAAAGTA TTTGGGAGCT 
    TGTGCTATGC TCATAATCAA GGCCATAAGG GAGACAAGTT TGAATCGAGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29938490 [Map]; Strand: c
      • AT1G79570.1 - [+] show detail - Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: ET14011 - 5-prime edge 
    ACTTTATGGG TGCCTATTAG GCCATTCTCT CAAAATCAAC GGTTGATGTC 
    GTTCTCACTG CGTAACATGT GACTGAAACA CTGAGCTGAT CACCGCATAA 
    CGAATCTAGG CATCTTGGCT AAGGTCAACA ATATGAACAA AAGAGTAATT 
    TCTGAAACTT TTGAGGCTAC TTTTCGAAAT TTCAATCATT TTGACCAGAT 
    TTGGATTTTC TCCTTTTGTT AATTAAACTA TATATATTTA TACGCTTCTT 
    GAGTTTTTTT TTTTTGTCCT TTAGCCCCCC CAAAAAAATG GCTTTTTTTT 
    TTATTTTTTA AAGGGGGGGG AAAAAATTTC CCAAATTTTT AAAAGCCCCC 
    CAAAAGGGGG GGCCGGAAAA AAGGAAAAAA TTTGGGGGAA AAAAAAAAAT 
    TTGGGGGTTT TTTTTTTGGG AAACGGTTTT CCCCGGGGGG G

AT1G79570.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain
Computational Description
Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (TAIR:AT1G16270.2); Has 118967 Blast hits to 117429 proteins in 4809 species: Archae - 112; Bacteria - 12197; Metazoa - 45923; Fungi - 10276; Plants - 32353; Viruses - 463; Other Eukaryotes - 17643 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G14220.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.6e-167 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR