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ET14013

CSHL Arabidopsis genetrap mutant lines

Original: ET14013

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14013

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15753013 [Map]; Strand: c
      • AT4G32650.1 - [+] show detail - potassium channel in Arabidopsis thaliana 3
        Distance: 0; Region: exon6 (CDS)
      • AT4G32650.3 - [+] show detail - potassium channel in Arabidopsis thaliana 3
        Distance: 0; Region: exon6 (CDS)
      • AT4G32650.2 - [+] show detail - potassium channel in Arabidopsis thaliana 3
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: ET14013 - 3-prime edge
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGAT 
    CTTATGGCCT TAGGTAAGTC TTGAAGAACC TCTTCTTGCC TTAACTCCGC
    GGTCTTGAAC TTGAGCTGCA TATGTGCAAG CATCTGTTCC CTCATTGTAT
    CCGGTAACCT GTTCTTGCTT GTGTATCGCA ATATATCATT GATCGCACTC
    CTCTGTTCAG CAGAAGAATG ATTATTGTAC GACTGGTACA GTAAATGAAT
    GAGTAAACAA TCTTTTCGGG TTTAAGCAAT GAATGATTAT ATACCATGGC
    GAATGTACGA AGAGCGCCAT GGACAACTAG ATTGGTCATG ATACCGATGA
    TATAAGAAGT GAGGCCAATG TTGAAAAGCA TGTAGAACAT GTTGAATGTC
    TTCTCACGGC TATTAACTGC ATGCAAATCA CCGTAACCCA CGGTAGTGAG
    TGTGACAATG GACCAGTACA TTGAGTAAGT GTACCCTAAC CATACACTTC
    TTTCCTTAAA ATCCTCAACT TGCGATCCTA TCCATGTATC CGTAGGCCTT
    GGATAATGGT AGGCTATCCA GTATAAAATG CAACCCGCCA AATGTATCCA
    AAATATCGTT ACCTGAATCA AATTTCACAA TTTGAATAAA AGTCATAGAT
    TGACATAGCC AATTTAGTGA TTGTATGGA
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15752958 [Map]; Strand: c
      • AT4G32650.1 - [+] show detail - potassium channel in Arabidopsis thaliana 3
        Distance: 0; Region: exon6 (CDS)
      • AT4G32650.3 - [+] show detail - potassium channel in Arabidopsis thaliana 3
        Distance: 0; Region: exon6 (CDS)
      • AT4G32650.2 - [+] show detail - potassium channel in Arabidopsis thaliana 3
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: ET14013 - 5-prime edge
    CCTACTTTCT CCCTGATAAG ATAAGCATTA ACCAACATCT ATTCCGCTCC 
    ATCATCGAAG AAGCTTATCT TTTTAAAGGA TTCCCCGAAG GCCTCCTCGT
    CCAGCTGGTG ATCGTCCATC AACAATTCCA TTTTCTTTTG TTCCTTGTTA
    AACAAGGCAG TGGTAATTCA TTCTTCTATG TTGTTGTTGT AGGTTTCGCA
    AATACAAGCA GAATATTTTC CGCCGAAAAT GGAGATAATC TTGCAGAATG
    AGATTCCAAC GGATTTCTAC GTAATTGTAT CTGGAGGAGT GGTATGATAT
    ATCTATATAT CCTCTACATA CTCATTCATT TATCCCGAAA AGATTGTTTA
    CTCATTCA

AT4G32650.1

Model type
Protein coding
Short Description
potassium channel in Arabidopsis thaliana 3
Curator Summary
Encodes KAT3, a member of the Shaker family of voltage-gated potassium channel subunits. Does not form functional potassium channel on its own. Involved in down-regulating AKT1 and KAT1 channel activity by forming heteromers with AKT1 or KAT1. The Shaker family K+ ion channels include five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inwardly rectifying conductance): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).
Computational Description
potassium channel in Arabidopsis thaliana 3 (KAT3); CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Cyclic nucleotide-binding-like (InterPro:IPR018490), Ion transport (InterPro:IPR005821), RmlC-like jelly roll fold (InterPro:IPR014710), Protein of unknown function DUF3354 (InterPro:IPR021789); BEST Arabidopsis thaliana protein match is: K+ transporter 1 (TAIR:AT2G26650.1); Has 6655 Blast hits to 6394 proteins in 956 species: Archae - 41; Bacteria - 1615; Metazoa - 2020; Fungi - 86; Plants - 876; Viruses - 0; Other Eukaryotes - 2017 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G32650.2

Model type
Protein coding
Short Description
potassium channel in Arabidopsis thaliana 3
Curator Summary
Encodes KAT3, a member of the Shaker family of voltage-gated potassium channel subunits. Does not form functional potassium channel on its own. Involved in down-regulating AKT1 and KAT1 channel activity by forming heteromers with AKT1 or KAT1. The Shaker family K+ ion channels include five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inwardly rectifying conductance): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).
Computational Description
ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1 (ATKC1); CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: K+ transporter 1 (TAIR:AT2G26650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G32650.3

Model type
Protein coding
Short Description
potassium channel in Arabidopsis thaliana 3
Curator Summary
Encodes KAT3, a member of the Shaker family of voltage-gated potassium channel subunits. Does not form functional potassium channel on its own. Involved in down-regulating AKT1 and KAT1 channel activity by forming heteromers with AKT1 or KAT1. The Shaker family K+ ion channels include five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inwardly rectifying conductance): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).
Computational Description
ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1 (ATKC1); CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Protein of unknown function DUF3354 (InterPro:IPR021789); BEST Arabidopsis thaliana protein match is: K+ transporter 1 (TAIR:AT2G26650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR