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ET14020

CSHL Arabidopsis genetrap mutant lines

Original: ET14020

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14020

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11149499 [Map]; Strand: c
      • AT5G29090.1 - [+] show detail - transposable element gene
        Distance: -123; Region: promoter
    Flanking Genome Sequence: ET14020 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAAGCAC 
    AACCACGCGC TCCTCCAACT GCTCAGAATC CCGCAACGGA GCCACGCACA 
    GCACTCCCGT AAGCTTAGCT CGCCAATGAG AGTTGTAGAG CAACGATATC 
    AATTGAGACC ACCATTCTCT TCACTCGACG AAAGNGGGAG AGTGGTCGTC 
    TATACACTGG CCAAGGGTTG GGATTGGTTC CCGAACCTCG GTTGGATATT 
    GATGATCAAT CTCAATGTGG CATTTTTGGG GAGCCCGTGA CTTGTCCGGT 
    CATAGAGCAT CTCGGGGGCG TTACAGTCCC CGGTGTGAGA ATAAGCATTG 
    GGATGAATAC GTGAGAAAGA TAAGTTATAA TCAATGTCAC CTTGTATGTG 
    GTGACTAACC GGATGGTCTT TCTCCTTGCT TAACATCG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12857501 [Map]; Strand: w
      • AT4G25010.1 - [+] show detail - Nodulin MtN3 family protein
        Distance: -960; Region: promoter
    Flanking Genome Sequence: ET14020 - 5-prime edge 
    GGTGTCCGCC CCGTGGTGAC ATATTTTATG GTTGTCTCCC ACCACTCTTG 
    GAACTTCATG ATTAGGCAGC CAAAATTACG TCCGTAACTA ATTCTATTTT 
    ATTAGCTCTC ATAACAACAA ATAATATCTT GTCCCTGTGA TAATGTATAT 
    AAACGCGTCG AGAAGAAAGC AAACAATATA AATTGTATAA AACAAAGAAT 
    AGTGCGTTTC ATCTTAGACG CGACTGTTGC GTGTGTAAAC CG

AT4G25010.1

Model type
Protein coding
Short Description
Nodulin MtN3 family protein
Computational Description
Nodulin MtN3 family protein; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT5G50800.1); Has 994 Blast hits to 947 proteins in 115 species: Archae - 0; Bacteria - 1; Metazoa - 233; Fungi - 0; Plants - 619; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G29090.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G33131.1)
Link
InterPro Scan - TAIR