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ET14096

CSHL Arabidopsis genetrap mutant lines

Original: ET14096

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET14096

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8897495 [Map]; Strand: c
      • AT2G20625.1 - [+] show detail - Protein of unknown function (DUF626)
        Distance: -277; Region: promoter
      • AT2G20630.2 - [+] show detail - PP2C induced by AVRRPM1
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: ET14096 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTATA 
    TCAGACCAAC GCAGTAAACA ACAGAGATTC AAGTTCTGCA GTGTTGCAGT 
    GTTGATAGGC CTATAGGCCC AAGTGAGCCA ACTTATGTCT TTTGACTTAT 
    CGTCTGTCTG AGGAAATCTC TCTCTATTCT AGCTTTGTAG ATAAAAGAAA 
    CCATTTAGAG TATTGGATCA ACAACCATGG ATTTTACATT GTGGCCAGAA 
    CATTTATTGT CAATGGAATT GTTTAAGCAA GACATGACTT TGATCACACA 
    GCTTAGGCGT TTTATACGTC TTTTGTTTCT CCCTCTCACA CACACCGGAA 
    TGGTAAAGTT TATAGACAAC AAAAGTTTAT CTATCACTGG AACCTTACAA 
    CTATACAAGA AATGTCGTCT GTGCTTTGCT TAGAGACTGC TTCTTCTATC 
    AACTCCTTGG CTGCCGCTTG TGGATCTTTT ATGCTTTTGA TCAAATCCAC 
    CGCTTCTTGG TTTCTAGATC ACCTGAAAAT TAATGCAACA CTCGTCAAGA 
    CATTGTTAAA GATTTCATCA CTCTGATGAT AACATGGGAC GAGATCTCAA 
    ATACCTTCCA AAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8897438 [Map]; Strand: c
      • AT2G20625.1 - [+] show detail - Protein of unknown function (DUF626)
        Distance: -220; Region: promoter
      • AT2G20630.2 - [+] show detail - PP2C induced by AVRRPM1
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: ET14096 - 5-prime edge 
    CTTTCTCCCT GGTCTGATAT ATATATTCTC TAGCCAGTTA TGAATGTATG 
    ACATCAACTC AGCTGATTCT AGTTGACTGG GTTAAGTTAT TAAGTTTCAT 
    TCATTTTCGT TTGTTTGATT GATGCAGCCG TGCTTCTTGC GACGAGAGGC 
    TCTCTCAGAA AGGTATTGTA GATGATTTGG ATGATGAAGC TGATTCTGTT 
    GACAAAGACG TGTCAGTGCC AATGGTAGAG AAACAGACAC AAACTCAAAA 
    TGGAAGTTCA AAAGCAAAAA AAAAGGCGTA AAGAGAAAGA TATGGTTGTT 
    GAAGCTTATG TAAAGCAGAC TGAAGCTCTT GAGAAGAAGA ATAGAATAGT 
    GGAACTGATG TTGGAGCGGG AGCATGCATC TAGTGTTAAG AGTGTACTAG 
    AGACGCTTAA TGGATTGCCT GGAGTTAGGA TGTGGTCTTC

AT2G20625.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF626)
Computational Description
Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT2G20620.1); Has 62 Blast hits to 62 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G20630.2

Model type
Protein coding
Short Description
PP2C induced by AVRRPM1
Computational Description
PP2C induced by AVRRPM1 (PIA1); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C, N-terminal (InterPro:IPR014045), Protein phosphatase 2C (InterPro:IPR015655); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT4G28400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR