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ET14113

CSHL Arabidopsis genetrap mutant lines

Original: ET14113

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14113

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET14113 - 5-prime edge
    CCCCCCCCCC CCAAAAAAAA A
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 306093 [Map]; Strand: c
      • AT4G00730.2 - [+] show detail - Homeobox-leucine zipper family protein / lipid-binding START domain-containin...
        Distance: -1585; Region: intergenic
      • AT4G00740.1 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: 1338; Region: intergenic
    Flanking Genome Sequence: ET14113 - 5-prime edge
    ACTTCTCGAC CGAATCTACA ACGAAACCCA TATGTTTCTT CTACCCAAAA 
    AAAAGTAAAA AGAGATCTTC GAGTCATGTT GACCTTTACG ACTTCAACTC
    ATATTTGTCC TTTCAAAATT TGTCATGGCC ATATTGTTGT CTCATGGAGA
    AACACTTTTG AGCCAACAGT CGGAAAACAA CCATCACTTA GCATTTTTTT
    ATTTTAATAC TACTATTTTT TTTTTGGAAA TAAGCCAGGG GCCCCACCCC
    AAATTTAAGG GGGTTTTTTT CAAACCCAAA AAAAAAAAGC CCCAAAACCA
    AAATCCTCCT CTTATCTTAA AGGGGGAAAC CCCCCTTTAC TTTGCCTTAA
    CCCGTTTTCC TTAAAAAAAT TTTGGGCCAA CCTCCGGGGA GTTCCTTTAA
    AACCGGGGGG CAAATTTTTC CAATTTACAA ACCAAAAATT GGCCTTACCC
    AAATTTTCCA AATTCTTCCC CCCTTTAGGG GAAAACATTT TTGCCCCAAA
    AGGGGACTTG GAAAAAACAA TTTAAAAAAG GTTTTTTGGG T

AT4G00730.2

Model type
Protein coding
Short Description
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Curator Summary
Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root development
Computational Description
ANTHOCYANINLESS 2 (ANL2); FUNCTIONS IN: transcription regulator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: root development, anthocyanin accumulation in tissues in response to UV light; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 1 (TAIR:AT3G61150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00740.1

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G10440.1); Has 1057 Blast hits to 1046 proteins in 101 species: Archae - 2; Bacteria - 148; Metazoa - 0; Fungi - 0; Plants - 904; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR