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ET14114

CSHL Arabidopsis genetrap mutant lines

Original: ET14114

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14114

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 551683 [Map]; Strand: c
      • AT1G02600.1 - [+] show detail - pre-tRNA
        Distance: -957; Region: promoter
    Flanking Genome Sequence: ET14114 - 3-prime edge
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGTT 
    ATATATAGAG AGAAAGGTTG CCAACGGAAA AAAAAAGATA GGTTGGGTTA
    AATTGTTCCA AGAAAAGGAA ATTACTCATA CCAATATAGA AAAAGGAAAT
    TGTTTATATC GATAATAAAA AGTGACCGTT ACAACAATCA TATCATATAT
    TTATTTTTTA CTGCCCTTGA TGTGAATTGA GGTGACTTGC GTTTGTTGTA
    GTTAATTAGA GATTCAAACA ATTGATTACT GCAGATGATT TAAAAAAAGG
    CCAAGATTAA AACGCAAACT TTAAAGTTGC TTCGATTCCG GTTAAGACTA
    TATGCAGTTT CAGTTTCCTT GATTTAGGAT TTTTCTTTGT TT
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 551598 [Map]; Strand: c
      • AT1G02580.1 - [+] show detail - SET domain-containing protein
        Distance: 2396; Region: intergenic
      • AT1G02590.1 - [+] show detail - Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein
        Distance: 540; Region: intergenic
    Flanking Genome Sequence: ET14114 - 5-prime edge
    TCTTTCTTCG AAAACAAAAA TCCACCTTCT TCTTCTTCTT CTTCTTCTTC 
    TTTCTTTTTA GTCTCTGTTT CTTCTTGATC AATTTCTATT CCTCTCTTAC
    AAAGAGAACT CACCGATCAC GAGAACGTCA AAAGCTCGAT GACCATCCGC
    GCCAATGTCA TCGGATCCGT TTGATCACAC GATTAAAGAT TTCACCACCG
    TTCTTATTTT CCGTCTCTGT TTTTTTGCGT TTCACGATCT TTACCAAATC
    ATGGACCGAC AGTCGGAGGT GGTGACGCAA ACCATGGATG ATGCATCATA
    TGCGTCGTTA TGACGAGATT CAGGTTTGTT GCTTCTATTT TGATCTCTTG
    GAACCTTGGA TTTATAATTT TAGCGCAACT TGCTGCTGCA AAAAGAAAGT
    CTCTTTAGGT TATAGGTCAA TCAATAATAA ACGCAATTTC ATGAGAGGAA
    CTAGGGTTTG CTCTTGAAGT CAGTTTTACG AAATTGACCT AATTTGCGGT
    TTTCTTGTCT GTTATCACTT TGTTTGTTAA ATTATTTTAA TTAACCTTTA
    GCTTTCTTCT TATTATTATT

AT1G02580.1

Model type
Protein coding
Short Description
SET domain-containing protein
Curator Summary
Encodes a putative transcription factor MEDEA (MEA) that negatively regulates seed development in the absence of fertilization. Mutations in this locus result in embryo lethality. MEA is a Polycomb group gene that is imprinted in the endosperm. The maternal allele is expressed and the paternal allele is silent. MEA is controlled by DEMETER (DME), a DNA glycosylase required to activate MEA expression, and METHYLTRANSFERASE I (MET1), which maintains CG methylation at the MEA locus. MEA is involved in the negative regulation of its own imprinted gene expression; the effect is not only allele-specific but also dynamically regulated during seed development. In the ovule, the MEA transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization
Computational Description
MEDEA (MEA); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT4G02020.1); Has 4870 Blast hits to 4762 proteins in 465 species: Archae - 0; Bacteria - 401; Metazoa - 1924; Fungi - 484; Plants - 1009; Viruses - 0; Other Eukaryotes - 1052 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02590.1

Model type
Protein coding
Short Description
Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein
Computational Description
Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein; FUNCTIONS IN: oxidoreductase activity, aldehyde oxidase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: aldehyde oxidase 4 (TAIR:AT1G04580.1); Has 1946 Blast hits to 1943 proteins in 514 species: Archae - 0; Bacteria - 697; Metazoa - 537; Fungi - 88; Plants - 177; Viruses - 0; Other Eukaryotes - 447 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02600.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-His (anticodon: GTG)
Link
InterPro Scan - TAIR