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ET14115

CSHL Arabidopsis genetrap mutant lines

Original: ET14115

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14115

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21809347 [Map]; Strand: w
      • AT5G53730.1 - [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
        Distance: -537; Region: promoter
    Flanking Genome Sequence: ET14115 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAAAAAAT 
    ATATTTTGTT CAACAACTTT CCTTCTTTAT CATTTTCATA CCGGTCTAAT 
    CATCTAAGTC TTCAACTAAC AAAATGATCG ATACTATATA ATGGACTTAT 
    GCTTTATTCT ATACACATCT TAGGTCTTTA ATTATATATG GATCTATATC 
    GGTTTCTTCT CATGACATGT TATCTTTTAA CTTTGGGTGA TATCAAAACT 
    TACCATGCAC GATCTCACAA AACATTAATC ATTTGAAGTT AAAGAAAAAC 
    GCAAAGTGTG CAAGAAAAAG AAGCTTTTCA AGACATTTCA AAGTCTCACG 
    ATGTGTTAAC TTTATTGATT ATTTGGTGTT TTCCTTAACT AATC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 616571 [Map]; Strand: c
      • AT4G01455.1 - [+] show detail - pre-tRNA
        Distance: -4639; Region: intergenic
      • AT4G01460.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -4188; Region: intergenic
    Flanking Genome Sequence: ET14115 - 5-prime edge 
    CTTTCTCCCT GGTTTTGGCT TTACATTTAT CCAGTTATTG GTTTTATTTT 
    GTTAAATCAT AGTTATTACC TTTCTTTAAA ATATATCTTA TTTTCATCTG 
    TTGTTAAAAA AAAAAAAACT TTTTTGGAAA TAAACCCGGG GAAAATTGGT 
    TAAAGGGGGC CCCCGTTCCC CGGGAAATTT TTTGGAAATT TCCCCCGGGC 
    CCGGGGGGAC AACTGGAAAC CCACCACTTT CTTAAAAAAA AAAATTCCCT 
    TTTTCCCCCC GCCCCCTTTG GAGGGGGGGA TTGGGATTCC CAAGGGATCC 
    CCCAAATCCT AGACCCTTTT TTCCGGCCCC TGGCTTTTCA CCGAAACCGG 
    GGGATTCTTT TAGGGCCAAA AAAAGGCCCC ATTTTTTTCC CCCCCCCAAA 
    AAAGGGATAA AAATTTTTTT TTTTTTTAAA AAAATTTTTC CCTTCCCACC 
    CCCAATCCCA GGGGAAACCC GGGTTAAAAA AATTGGAATT GGAAAACCCT 
    TTTCCTTTTC TCCAAAGAAA AACCCTCCGA CCCCCCGGGA AGGGGTTGTC 
    CCCGGGGAAA AAAATTTTTG GCCAAAAACC CCCAACCGTT TCCGTTTTTT 
    TCCCGGGCCG GGAATAAAAT TTCCCCCCCA CCAATTTTTT TTTTTTTTAA 
    A

AT4G01455.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Glu (anticodon: TTC)
Link
InterPro Scan - TAIR

AT4G01460.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G61950.1); Has 1536 Blast hits to 1519 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 44; Plants - 1468; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G53730.1

Model type
Protein coding
Short Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Computational Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT3G44220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR