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Mutant Lines
ET14125

ET14125

CSHL Arabidopsis genetrap mutant lines

Original: ET14125

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14125

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 3; Position: 22439970 [Map]; Strand: c
- AT3G60710.1 - [+] show detail - F-box family protein
  Distance: -228; Region: promoter

TTACCGACCG TTACCTACCG TTTTCTCCCT ACTAAACTCG TCTCAATTTT 
TTGGATTATT AGGTTTTGGA AATATCTGAG AGAGCTCTGC TCGAACGTTG 
ATTGTGAACT TGATCTCAAC TTAATTTGCT TTCTATGAAT GCGATTTCGT 
GTTAACTGGT CTAGAAATTT CTACCACTCA TGTTGCAGAA CGCGGTTTAA 
TTTTGATTTG TTTTCTTAGA CCTAAGCTAA TAAATACCGG GTCTTTGTCT 
CTTTGTGCTG TTGATCAATT TACGGACCAA TGGAAGATTT GATAAGCCAA 
TTGCCCAATG AGTTGCTGCA AGAGATACTC TTGAATCTTC CCACGAGTGA 
GTCTGATAGG ACAAGTGTCT TACCGACAAG ATGGAGAAAT CTCTGGCAAA 
GTGTTCCTGG TTTGTACCTA ATTTCTCGA

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 1716048 [Map]; Strand: w
  - AT5G05700.1 - [+] show detail - arginine-tRNA protein transferase 1
    Distance: -317; Region: promoter
  - AT5G05710.1 - [+] show detail - Pleckstrin homology (PH) domain superfamily protein
    Distance: 0; Region: exon1 (CDS)
  - AT5G05720.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: -823; Region: promoter
Flanking Genome Sequence: ET14125 - 5-prime edge
```
ACGGTAGAGG TATTTTACCG ACCGTTACCT TCCGTTTTCA TCCCTACCCA 
GAACGAACCG TCTGGCTCAC GAAACAAGGA GAGTACATCA AGACTTGGCG 
ACGCCGATGG TTCGTGTTCC AACAAGGGAA ACTCTTCTGG TTCAAAGACT 
CCGACGTCAC GCGTGTGTCA CGCCCTCGCG GTGTCGTCCC CGTCGCATCG 
TGCTTAACCG CTAAAGGAGC AGAGGATGTA CTCAACAAGC AAA
```

AT3G60710.1

Model type: Protein coding
Short Description: F-box family protein
Computational Description: F-box family protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G78840.1); Has 1477 Blast hits to 1302 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1475; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G05700.1

Model type: Protein coding
Short Description: arginine-tRNA protein transferase 1
Curator Summary: Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence.
Computational Description: arginine-tRNA protein transferase 1 (ATE1); CONTAINS InterPro DOMAIN/s: Arginine-tRNA-protein transferase, N-terminal (InterPro:IPR007471), Arginine-tRNA-protein transferase 1, eukaryotic (InterPro:IPR017137), Arginine-tRNA-protein transferase, C-terminal (InterPro:IPR007472); BEST Arabidopsis thaliana protein match is: arginine-tRNA protein transferase 2 (TAIR:AT3G11240.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G05710.1

Model type: Protein coding
Short Description: Pleckstrin homology (PH) domain superfamily protein
Computational Description: Pleckstrin homology (PH) domain superfamily protein; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: pleckstrin homologue 1 (TAIR:AT2G29700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G05720.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleotide binding;nucleic acid binding;RNA binding (TAIR:AT4G19610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR