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ET14141

CSHL Arabidopsis genetrap mutant lines

Original: ET14141

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14141

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1716028 [Map]; Strand: c
      • AT5G05700.1 - [+] show detail - arginine-tRNA protein transferase 1
        Distance: -297; Region: promoter
      • AT5G05710.1 - [+] show detail - Pleckstrin homology (PH) domain superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G05720.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -843; Region: promoter
    Flanking Genome Sequence: ET14141 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACTTCT 
    ACGAATGGGT CACAGACAAA ACATACTTCA CCAGCTTTGG GCCTAAACAA 
    CTTCATCAGC CCAATAAGAT AAAACCTAAA AACCCACTTC GCTTGTTGAA 
    TTTTCTTCTT CGTCTCACTC GACGAAACGN GGNGNCGTCC CCGTCGCATC 
    GTGCTTAACC GCTAAAGGAG CAGAGGATGT ACTCAACAAG CAAAACGCGT 
    TCGAGCTATC GACGAGAAAT GAGACTATGT ACTTCATTGC TGATTCGGAG 
    AAGGAGAAAG AAGATTGGAT CAATTCCATT GGACGTTCCA TCGTGCAAAA 
    CTCCAGATCC GTTACCGATT CTGAGATCGG TGATTACGAT AACAAACACT 
    AAAGTTTCTC TGTTTTTGTC TTTTGGCAAA GTGATTATGA TCACAGCTTT 
    CATTGATGGA GTCTTAAATG TGAATCTTAC AAAATCAAGA AATGAAGAGC 
    TTTGTCTCTG CTTGAAACAT GAACTCATAT CCGAAAAACA TATAATATAA 
    AACCTAATTC TTCAAGGGCA ACGCTTCGGG GTCAAAGACT TACATGGGTC 
    TT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20866064 [Map]; Strand: w
      • AT3G56250.1 - [+] show detail - unknown protein; Has 109 Blast hits to 83 proteins in 41 species: Archae - 0;...
        Distance: -56; Region: promoter
    Flanking Genome Sequence: ET14141 - 5-prime edge 
    GCTCTCGAGC CTTCTTCAGA CTCTTCTTCT TTTCCGTGCT ATTACACATT 
    CCCGCCAACA GAGAGTAGAA ATCTTCTCCC ACAAAACCTC AGATGAATCA 
    TCCCAAGATT CCGACGCCGG GTAAACAAAT GGAAGCTCCT CGCTCCGTCG 
    GAGGAAGAAT AGAGAGGAAA CCGCTCGCGG ATTGTACCAA CACCGTCTCC 
    AGAT

AT3G56250.1

Model type
Protein coding
Computational Description
unknown protein; Has 109 Blast hits to 83 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa - 18; Fungi - 20; Plants - 21; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G05700.1

Model type
Protein coding
Short Description
arginine-tRNA protein transferase 1
Curator Summary
Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence.
Computational Description
arginine-tRNA protein transferase 1 (ATE1); CONTAINS InterPro DOMAIN/s: Arginine-tRNA-protein transferase, N-terminal (InterPro:IPR007471), Arginine-tRNA-protein transferase 1, eukaryotic (InterPro:IPR017137), Arginine-tRNA-protein transferase, C-terminal (InterPro:IPR007472); BEST Arabidopsis thaliana protein match is: arginine-tRNA protein transferase 2 (TAIR:AT3G11240.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G05710.1

Model type
Protein coding
Short Description
Pleckstrin homology (PH) domain superfamily protein
Computational Description
Pleckstrin homology (PH) domain superfamily protein; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: pleckstrin homologue 1 (TAIR:AT2G29700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G05720.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleotide binding;nucleic acid binding;RNA binding (TAIR:AT4G19610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR