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ET14145

CSHL Arabidopsis genetrap mutant lines

Original: ET14145

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14145

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 11757641 [Map]; Strand: w
      • AT3G30120.1 - [+] show detail - pseudogene, similar to CTV.22, blastp match of 29% identity and 4.9e-74 P-val...
        Distance: -1156; Region: intergenic
      • AT3G30122.1 - [+] show detail - expressed protein
        Distance: 850; Region: intergenic
    Flanking Genome Sequence: ET14145 - 3-prime edge
    GTAGAGGTAT TTTACCGACC GTTACCGAGC GTTTTCATCC CTACTTCTAC 
    GAGGGGGTCA GAACAAAACA TACTTCACCG CTTTGGGGCT AAAGAACTTC
    GTCAGCCCAA TAAGAGAGAA CCTAAAAACC CACTTCACTT GG
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17621877 [Map]; Strand: w
      • AT1G47860.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET14145 - 5-prime edge
    GATTTCCATC CTACTTTCTC CCTGCCTAAA CTGCCTAACT CGACATACGA 
    CCTTCCTCCA GTAATGGCCT AGCTCGTTTA TCGCGATATG AACTACGTGT
    GGCTTGATCC CTTTCTAAGG GTACGTAGGC AGCCTTTTAC AAGGTTCAGC
    TATCAAGATC GTCTTCCGGC CTCAAGCTCG TCTTTCATCT CACTCGA

AT1G47860.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.0e-40 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT3G30120.1

Model type
Pseudogene
Computational Description
pseudogene, similar to CTV.22, blastp match of 29% identity and 4.9e-74 P-value to GP|24461867|gb|AAN62354.1|AF506028_23|AF506028 CTV.22 {Poncirus trifoliata}
Link
InterPro Scan - TAIR

AT3G30122.1

Model type
Pseudogene
Curator Summary
pseudogene similar to peptide chain release factor protein
Computational Description
expressed protein
Link
InterPro Scan - TAIR