ET1415

CSHL Arabidopsis genetrap mutant lines

Original: ET1415

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET1415

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET1415 - 5-prime edge 
    AATTATTAAT TATTAAATTT TGGTCTCTTA ATTAATACTC A

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 301906 [Map]; Strand: c
      • AT3G01850.1 - [+] show detail - Aldolase-type TIM barrel family protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G01850.2 - [+] show detail - Aldolase-type TIM barrel family protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G01860.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: respo...
        Distance: -739; Region: promoter
    Flanking Genome Sequence: ET1415 - 5-prime edge 
    CAAAACNTAC GTCGNNTATT NTATCATCCG ACTNCCCCAA TCAAGCGGCG 
    GAGGCCAATC GGATGATCTC ATTTGGGCGC CNGCTGGCTT CACATGGATA 
    TGATGGTACC CACCTTTNAT TCTTTACTCT GGGGGTGATT TTCGATAGGT 
    ACATCNATCT CTGAATTCNA NTCCCAAACT TGCATCGTAC ACAATTCGTG 
    AAATCATCCT ACANAANGNT CGTTNTTTTG GTCTTGNNGG AATCNTNATT 
    NNTTTTAACA ANATGGAAAC TACACNTGTT GTTGTTGTNG TTNTTGTTTC 
    ACTANCTATT CTTGTGTNTN ATACGTNTC

AT3G01850.1

Model type
Protein coding
Short Description
Aldolase-type TIM barrel family protein
Computational Description
Aldolase-type TIM barrel family protein; FUNCTIONS IN: ribulose-phosphate 3-epimerase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate 3-epimerase (InterPro:IPR000056), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G63290.1); Has 9076 Blast hits to 9073 proteins in 2640 species: Archae - 49; Bacteria - 5613; Metazoa - 177; Fungi - 138; Plants - 141; Viruses - 0; Other Eukaryotes - 2958 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01850.2

Model type
Protein coding
Short Description
Aldolase-type TIM barrel family protein
Computational Description
Aldolase-type TIM barrel family protein; FUNCTIONS IN: ribulose-phosphate 3-epimerase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate 3-epimerase (InterPro:IPR000056), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G63290.1); Has 9076 Blast hits to 9073 proteins in 2640 species: Archae - 49; Bacteria - 5613; Metazoa - 177; Fungi - 138; Plants - 141; Viruses - 0; Other Eukaryotes - 2958 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01860.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 66 Blast hits to 66 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR