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ET14207

CSHL Arabidopsis genetrap mutant lines

Original: ET14207

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14207

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 42989 [Map]; Strand: w
      • AT4G00120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET14207 - 3-prime edge
    AAGTATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAG ATCCACCTCC 
    CGAAACCCTA ATTCACTTGG ACGAAGACGA AGAGTACGAT GAAGACATGG
    ATGCGATGAA GGAGATGCAG TACATGATCG CCGTCATGCA GCCCGTAGAC
    ATCGACCCTG CCACGGTCCC TAAGCCGAAC CGCCGTAACG TAAAGATAAG
    CGACGATCCT CAGACGGTGG TTGCTCGTCG GCGTCGGGAA AGGATCAGCG
    AGAAGATCCG AATTCTCAAG AGGATCGTGC CTGGTGGTGC GAAGATGGAC
    ACAGCTTCCA TGCTCGACGA AGCCATCCGT TACACCAAGT TCTTGAAACG
    GCAGGTGAGG ATTCTTCAGC CTCACTCTCA GATTGGAGCT CCTATGGCTG
    ACCCCTCTTA CCTTTGTTAT TACCACGACT CCCAACCCTG ATGAACTACA
    CAGAAGCGCG CTAGCTAGAC ATTTGGTGTC ATCCTCTCAA CCTTTTTCAT
    GTTGATATAT TATATATAGA TGCATAAAGA TTCGATCCAA GATTGTATGG
    GTGTTTTAAT ATTATTATTC TAAGATATAT GATGTACAAT TGTGTACCAA
    GTTTCTTTAT CTTGATATCA TATGCATAAA TAATTGGTGA ATAAAAAGAA
    GATATTGATT GTAAACAAAA AAAGAAGATA TTGATTGTTA ATTAGGGTTT
    GATCATTTTG TATGCAAGCT TTGGCCTGCA AATTAATTTT CGATGTATAT
    ATATATATAT ATGGGGGAG
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 43064 [Map]; Strand: w
      • AT4G00120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET14207 - 5-prime edge
    TGGGTGGATC TAACATGAGA TGGTGAGGAT CATTGAGAAA AGCTGCGTGT 
    TCTTGTGTGA GAAGATCATT AGCTTTGTTC CAATCCATGA GGAGATGGTG
    AGGCTGAGGC TCCATCATGC TTCTTTTGGG GCTGTGGTTG GATCTGCTTT
    TGGACAAGAC ACAAGAGTCG CACACTCCTT TCTTTTTATA CATACCATTT
    TCCATTTTCA TCTTTTCTTA TTTCTCAATA TATATATTCT TTTTCCAGAA
    ATATACACAT ATGTATTTAC TGATATATAT CTTTGACTCG ATTAATTAAC
    CGAATGCTTA CATGCATGTC TCTTATTATT TACTTCATCT CACTCAACC

AT4G00120.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
INDEHISCENT (IND); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: polar nucleus fusion, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G09750.1); Has 2280 Blast hits to 2276 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR