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ET14259

CSHL Arabidopsis genetrap mutant lines

Original: ET14259

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14259

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19662847 [Map]; Strand: w
      • AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -230; Region: promoter
      • AT2G48070.3 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon1 (5UTR)
      • AT2G48070.1 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon1 (5UTR)
      • AT2G48070.2 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET14259 - 3-prime edge 
    AGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACT CTCCTCCATA 
    ATCGCGATAA GGAAGAAGAA ACTTGTTGGC TTTATTGAAC CGGTCCAATT 
    CTCAACCGAA CTCCGGTATT CCAAATTAAA AGCCAGCAAT CAATAATTGA 
    ATCTCGAGCC CACGACGGTT TGATTGGTTT AGCCATTTCT CGGCGCTAAA 
    TATAATTTAT TAAAATGATG ATTATTGCGA GAAGAAAAGA TCTTTCTTTG 
    ATTTTTGCTT GTGGATTTGG ATTTCCAGTT TCCAATTCTC TCAAATTTGC 
    AATCCACCTT CAAATTCACA CACATCTTCA ACAGCTACCT TTTCGGGAAC 
    TTGCTAGAAT TCGTGAGAAT TGGAAATTTT TATCCTCCGT TTTAGTCTCC 
    GGCGGGCTGA TTTCGTTGGC CTTTTGGAAG AAATTGAGGT CGGAGCTAGA 
    GAGGGGATCT ATTGAATTCG ATGAGAATTG GGATATGGTG ATCGTTAAGA 
    CAAAAGTTTC CAATGGCGAG TTTTTTGGTG GGCTTCTTGT TGCCTTCGCT 
    TCTTCTGGCA G

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19662914 [Map]; Strand: w
      • AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -297; Region: promoter
      • AT2G48070.3 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon1 (CDS)
      • AT2G48070.1 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon1 (CDS)
      • AT2G48070.2 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET14259 - 5-prime edge 
    CTTTCTCCCT GGAGGAGAGA TGAGTTGGTC TCTCTGCAGC ACCCATGGGG 
    TCTCCTCTTC CATAGCTCTC ACTTATGGCT TTCGCCATAG AAGAAGATCC 
    ACCTTCCGTA TTTTCGCCAC CTCTGACGGA TTAGAACCCA AGGACGACCC 
    GCCGGAATCT CCTCTCCCTT CCTCATCCTC TGCTCTCGGT AAAGACTTGA 
    AAAAGGTCCG CCTTTTTTCT ATATCATTTA CGATTTTTCT GTTGAAACCA 
    TAGGAAGACA TGAAAATGAA AATGCACCAT GTTAGATTGG TCTCTAGTGC 
    TTGAACCTGT TGAAAGAGTT GCTCAAGCTT ATGACTTTTC AATTCAAGCA 
    GGTTGTTAAC AAGACTGCTG CAACCTTTGC CCCTAGAGCT TCCACCGCCA 
    GTAAAAACCC TGCTCTCCCT GGAACTACTC TTTACAAAGT TTTTGAGGTT 
    CAAGGCTATG CATCGATGTT CCTCGGAG

AT2G48060.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.1

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.2

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.3

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.
Link
InterPro Scan - TAIR