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ET14270

CSHL Arabidopsis genetrap mutant lines

Original: ET14270

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14270

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 652974 [Map]; Strand: w
      • AT5G02850.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET14270 - 3-prime edge 
    TAGAGGTATT TTACTGACCG TTACCGACCG TTTTCATCCC TATATGCACA 
    GCACTACCAA CAAGAGGTGC TTGCCCTGCA CCGAATTCCG GCGGAGCAAA 
    TGTGGTGTAG CTAATCTTGT GAGCGTAAGC TAATATGTCC TTTAACTTGA 
    GCTGAGATGA AACTGTGGTT GAAGAAGAAG AAGACTCATT ATCATTGTCT 
    TCGTCATCTT CTTCAATTTT GCTTCGTTTT GGTTTGCGGT AATCGGAGTA 
    GTCGTCAACA AGCATATCGA GAACACGTTC TGCATCCTTG AGTTTGTTAG 
    CGAAAGCGAG AAGAGATGAA TCTTTGGATT TGATCTCACG CGCCACCTTC 
    TGCTTCGCGT CTTGCAGATC GAGGATCTCT TGAAGCTCTG TAACGGCTTC 
    GAAGAGCTGA GTCTGGAGGG AATTGAATTG AGAGAGGATC TCCTTCGTGG 
    ATGAAGGACT AGGGTTTTCA AGCGGCGGCG GAGGTGGTAA CGAGTGTGAG 
    GAGAGGAACG AAGGGAGAGA GCCACGGAAA GCTGAGAGCC AGATAGCTCG 
    ATTGGGAGAG ACGTCGAAGA GCTTAGATGT CAAAACCGCC ATCTGCTGGA 
    GAAGAGCTTG AGCTCGCGGT AATGGAGGAA GGAGCGATAG CAAGGCGGAG 
    GATGAAACAG CCGCCGAAAC TGAGGC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 653029 [Map]; Strand: w
      • AT5G02850.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET14270 - 5-prime edge 
    TTCCTCCTAC TTTATCCCTG ACACCAGCTC CACAGACGAA CAAATGAGAG 
    CTTCCCAGCT CTACACTTTC GCTGATCTTG ATATCGGTCT GCCGAAAACA 
    GTAGAAAACA TGGAGAAGAA GGTTGAAGCA CTGATTGAGC CACCACCACC 
    ACCAGAAGCT ATGGATATAT CTGCTATTCA CAACCTGCTT CCGCCGAATA 
    TCGCAGTTCC TTCAGGATGG AAACCAGGAA TGCCAGTCGA ATTGCCTAGA 
    GATTTACCAT TGCCACCTCC TGGATGGAAA CCAGGCGACC CAGTTGTGTT 
    ACCGCCACTG GAGTCAATTG CTGCACCTAG AGCAGAGGAT CATCAACATA 
    TGAGACCTTC TCAGGGACTC CACAGACCGC CTGATGTCAT ACAGGTCCGA 
    GCTGTTCAAC TTGACATTCT GGAGGATGAT GATAGCAGTG ATTACAGCAG 
    CGATGATGCC AGCTCAGATG ATGAGGATTA ATCAACATTG TGATTGATGG 
    TTCTCTGTAA GGTAATGATT

AT5G02850.1

Model type
Protein coding
Short Description
hydroxyproline-rich glycoprotein family protein
Computational Description
hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med4 (InterPro:IPR019258); Has 258 Blast hits to 243 proteins in 75 species: Archae - 0; Bacteria - 23; Metazoa - 102; Fungi - 36; Plants - 37; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).
Link
InterPro Scan - TAIR