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ET14272

CSHL Arabidopsis genetrap mutant lines

Original: ET14272

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14272

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2506960 [Map]; Strand: w
      • AT4G04925.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 174; Region: intergenic
      • AT4G04930.1 - [+] show detail - fatty acid desaturase family protein
        Distance: -2173; Region: intergenic
    Flanking Genome Sequence: ET14272 - 5-prime edge 
    CCCTGCTTAC AGGCGCCCTG CACACATTAA ACTGTAACCA ACAAATTCAA 
    CTTAAAGGCC TAATATTATG AAAGCTCAAT CTAGAAACTA AACCTTTTGA 
    GGAAGTAAAC ATTAAAACTT CCAACACAGA GCCACATGTG ATGCTATGAA 
    CTAAAGTTTA ACACGTTGAG AGATGAAGTT TATGTTGTCG CCGTTCATCG 
    TATGGTAAGC AACAAACGGA AACTCCAAAA CCACCGGAAA CCATTAGAAC 
    TTCAAACACA GAAGTCTATC GGTTTTTAAT TGGAGAAGCT CACTAAACTT 
    CAACATCAAA ACTGCAAAGA AAATATCTTC CCAAAGCAAT TGATTCCAAA 
    TCTCCGAAGA ACATCGGTGA AACATTTAAA TCGATGGAGC TTTCAGCAAC 
    ACCTATAAAC GAAGAGAAAC AAACTCGATT CCATAGATCG GTTAAAGAAA 
    TAGCCACAAT TGCATAAATT CAATCCAAAG TCACAAAAAA AAACCCTTAC 
    CCCCAAACTC CAATTGGTCC TTAAAAATGA AAATGGAAAA ATTGGGAA

AT4G04925.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04930.1

Model type
Protein coding
Short Description
fatty acid desaturase family protein
Curator Summary
Encodes a sphingolipid delta4-desaturase, involved in sphingolipid biosynthesis. Specifically expressed in floral tissues. Knockout mutants were devoid of sphinga-4,8-dienine in floral tissues.
Computational Description
DES-1-LIKE; FUNCTIONS IN: oxidoreductase activity, sphingolipid delta-4 desaturase activity; INVOLVED IN: sphingolipid biosynthetic process; LOCATED IN: integral to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sphingolipid delta4-desaturase, N-terminal (InterPro:IPR013866), Fatty acid desaturase, type 1 (InterPro:IPR005804), Sphingolipid delta4-desaturase (InterPro:IPR011388); Has 703 Blast hits to 697 proteins in 257 species: Archae - 0; Bacteria - 174; Metazoa - 227; Fungi - 120; Plants - 36; Viruses - 3; Other Eukaryotes - 143 (source: NCBI BLink).
Link
InterPro Scan - TAIR