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ET14274

CSHL Arabidopsis genetrap mutant lines

Original: ET14274

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14274

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 242471 [Map]; Strand: w
      • AT4G00560.4 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -120; Region: promoter
      • AT4G00560.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -92; Region: promoter
      • AT4G00560.2 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -92; Region: promoter
      • AT4G00560.3 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -92; Region: promoter
    Flanking Genome Sequence: ET14274 - 3-prime edge
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAATAC CAAAAGGTTT 
    AAATGGTTTC GAGATTCAAC CAACTTTGAA GAGTTGTTAA TGCAGTTGCA
    GAAGCATGTT AACCGAAAAT CATTCCAAAC CGGAGAATAT CAACTCGAAC
    CAGAATACCA AACCGGAAAT TCCAAAAGTG ATCGTGCTAT GTTTAAGTTA
    AAATTTAAAT TAAGCAAACA CCGGAGAGTG ATTGGATCGG GGAATTTGGG
    AAAAGTATGG AGAAGAAGAC GAAAGTGCTA ATTGTGGGAG GTACTGGATA
    CTTGGGTCAG CATCTTCTTC AAGCTTTCGC CGGCAACTAT GGCGGTGAAT
    GTGAGCTATA CGACGTCGCT TTCACTCACC ATTCTTCTCC ACTTCCCG
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 287184 [Map]; Strand: w
      • AT4G00700.1 - [+] show detail - C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET14274 - 5-prime edge
    TTACAGGAAG CCTATACCCG TATGTCGTAG TAAAAATCGG AAACTTCAAA 
    GGTGTTACCA CACATTTTAA CAAGAATACA GATCCCGAGT GGAACCAAGT
    CTTTGCCTTC GCTAAAGATA ATCTTCAGTC GAACTTTCTT GAAGTTATGG
    TCAAGGATAA AGACATTCTC CTTGATGATT TTGTTGGGAT CGTTAAATTC
    GATCTCCGTG AGGTTCAGTC TCGCGTTCCT CCTGATAGTC CTTTAGCTCC
    CCAGTGGTAC AGACTGGAGA ACAAGAGAGG CGAGAAGAAG AATTATGAGA
    TAATGCTTGC TGTGTGGTCT GGAACTCAGG CTGATGAAGC TTTCGGGGAT
    GCGACTTTCT CAGACTCATT GGTAGATTCA GACAGCTCCA ACATTATATC
    CGCTAACCTG CGCTCAAAAG TCTACCATTC GCCTCGGCTA TGGTACCTAA
    GGGTGCAAAT ATTGGAGGCT CAGGACGTCA TCATCGTGTC TGACAAATCC
    CGTGTTCCAG AGGTCTTTGT GCGAGTAAAA GTCGGTAATC AGATGTTAAG
    GACTAAATTT CCCCAGAGAA GCAATAATCC AAAATGGGGT GATGAGTTCA
    CGTTTGTAGT CGCGGAGCCG TTTGAGGATA ACTTGGTTCT CTCCGTGGAA
    GATCACACTG CTCCTAACAG AGATGAGCCA GTAGGAAAAG CTGTGATTTT
    GATGAATGAC ATAGAGAAAC GTATAGATGA TAAAC

AT4G00560.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: dTDP-4-dehydrorhamnose reductase activity, binding, catalytic activity; INVOLVED IN: dTDP-rhamnose biosynthetic process, extracellular polysaccharide biosynthetic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), dTDP-4-dehydrorhamnose reductase (InterPro:IPR005913); Has 7761 Blast hits to 7761 proteins in 1842 species: Archae - 350; Bacteria - 5037; Metazoa - 116; Fungi - 124; Plants - 45; Viruses - 0; Other Eukaryotes - 2089 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00560.2

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: dTDP-4-dehydrorhamnose reductase activity, binding, catalytic activity; INVOLVED IN: extracellular polysaccharide biosynthetic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), dTDP-4-dehydrorhamnose reductase (InterPro:IPR005913); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00560.3

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: dTDP-4-dehydrorhamnose reductase activity, binding, catalytic activity; INVOLVED IN: extracellular polysaccharide biosynthetic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), dTDP-4-dehydrorhamnose reductase (InterPro:IPR005913); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00560.4

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: dTDP-4-dehydrorhamnose reductase activity, binding, catalytic activity; INVOLVED IN: extracellular polysaccharide biosynthetic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), dTDP-4-dehydrorhamnose reductase (InterPro:IPR005913).
Link
InterPro Scan - TAIR

AT4G00700.1

Model type
Protein coding
Short Description
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
Computational Description
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (TAIR:AT4G11610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR