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ET14306

CSHL Arabidopsis genetrap mutant lines

Original: ET14306

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET14306

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 900633 [Map]; Strand: c
      • AT2G03050.1 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G03060.1 - [+] show detail - AGAMOUS-like 30
        Distance: -510; Region: promoter
      • AT2G03060.2 - [+] show detail - AGAMOUS-like 30
        Distance: -510; Region: promoter
    Flanking Genome Sequence: ET14306 - 3-prime edge 
    TAAAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT TAGATAAGAA 
    GCGAAGAACT GGTAAGATTT CAGATTCAGG ATCAGAAGTT AACAAATCTG 
    GAAACATGTC GAGGATACGA CCAACGGCGG GTCTTGAGAG TCCGGTGGAA 
    GAGAGTAGAG TCTCGACGGA GACGACGGAG GAGATTGGAG CAGAACGGAG 
    AGATGGGTTT ACTCGGAGAG CTTTGTGAGG ATCTACGTTA AGGTCTTGAA 
    GGTAAATAAG CTTCTCTCGG AATAGAATCC CAGTATCTGA GGTTTCCCCG 
    GCGAAACATC TAATCCTTAC GGCGGAGAAA CACGGCGGCG GAAAAAGAGA 
    GCACCTTGCA ATCATCATCG TCGGTGAGGT AGGAAAAAAA AGTTTCAATC 
    TTTAAAGTGT GGATAAAACA ATGGAAGAAG GGTAAAATAG TAATTCTGTC 
    GTAACGGTCA GATAAAGATT AAACGACGTA GTTTTTTGGC TGAGAGTTGT 
    TTCTGCTTCT TCTTCTTCTT CCAATGAGGA TCCCTATTCT CAAGCGGCTT 
    AATCA

AT2G03050.1

Model type
Protein coding
Short Description
Mitochondrial transcription termination factor family protein
Curator Summary
A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
Computational Description
EMBRYO DEFECTIVE 93 (EMB93); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cellular response to singlet oxygen, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G34620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G03060.1

Model type
Protein coding
Short Description
AGAMOUS-like 30
Curator Summary
Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL30 is expressed in pollen.It forms heterodimers with other MICK family members.
Computational Description
AGAMOUS-like 30 (AGL30); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: pollen development; LOCATED IN: nucleus; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 94 (TAIR:AT1G69540.1); Has 5791 Blast hits to 5791 proteins in 704 species: Archae - 0; Bacteria - 0; Metazoa - 613; Fungi - 306; Plants - 4796; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G03060.2

Model type
Protein coding
Short Description
AGAMOUS-like 30
Curator Summary
Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL30 is expressed in pollen.It forms heterodimers with other MICK family members.
Computational Description
AGAMOUS-like 30 (AGL30); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: pollen development; LOCATED IN: nucleus; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 65 (TAIR:AT1G18750.1); Has 6155 Blast hits to 6155 proteins in 757 species: Archae - 0; Bacteria - 0; Metazoa - 616; Fungi - 313; Plants - 5146; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
Link
InterPro Scan - TAIR