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ET14308

CSHL Arabidopsis genetrap mutant lines

Original: ET14308

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14308

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 654617 [Map]; Strand: w
      • AT4G01516.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 4660; Region: intergenic
      • AT4G01520.1 - [+] show detail - NAC domain containing protein 67
        Distance: 1790; Region: intergenic
    Flanking Genome Sequence: ET14308 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAGATT CAAGCTCTGA 
    TACCATAAAG AGAGAGTCAG AGGCTGAGAA TTTCTGTGTA TTAAGAAATA 
    GTTCGCGAGC GTACATATAT AGCTAACTCT AAACAAGAAT CTGAAATCTA 
    GGTACAATCT AACTAGTTAC AACAATCTTT GCCTTTGTTA CGGAGTTGAT 
    CGCAACCTTC GAATATTTGC AGTATCTGTG GAATATGCTG AATTTGAGTA 
    AACCAACTTG AACCAAACTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 12616546 [Map]; Strand: w
      • AT5G33382.1 - [+] show detail - transposable element gene
        Distance: -17; Region: promoter
    Flanking Genome Sequence: ET14308 - 5-prime edge 
    TTTTCTGAAA TTTTCTAATT GAACTCGTGA AGAATCAATG GCGACAGAGA 
    CTGGTGCTAA TGCAACTGTG GAGGTGAGAA GAACCATCTC ACCTTATGAC 
    TTGACCTCGG CTGACAATCC CGGAGCGGTG ATCTCTCATC CTCTTTTGAA 
    GGGATCTAAC TACGATGAAT GGGCCTGCGG CATGAAGACG GCATTGACAT 
    CGCGGAAGAA GTTTGGCTTT CTCGATGGAT CGATTAACAA ACCGGCTGAA 
    GGCTCACCTG ACTTGGAGGA TTGGTGGACA ATTCAAGCCC TCCTTGTATC 
    TTGGATTAAG ATGACCATTG ATCCGATGTT ACGTTCGACC ATCTCTCACA 
    GAGACGTGGC AAAGGATTTG TGGGACTACC TGAAGAAACG TTTTGCTGTG

AT4G01516.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01520.1

Model type
Protein coding
Short Description
NAC domain containing protein 67
Computational Description
NAC domain containing protein 67 (NAC067); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC with transmembrane motif1 (TAIR:AT4G01540.1); Has 2752 Blast hits to 2745 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2752; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G33382.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 2.3e-126 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)
Link
InterPro Scan - TAIR