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ET14316

CSHL Arabidopsis genetrap mutant lines

Original: ET14316

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14316

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 556500 [Map]; Strand: c
      • AT2G02160.1 - [+] show detail - CCCH-type zinc finger family protein
        Distance: -387; Region: promoter
      • AT2G02170.1 - [+] show detail - Remorin family protein
        Distance: 0; Region: exon7 (3UTR)
      • AT2G02170.2 - [+] show detail - Remorin family protein
        Distance: 0; Region: exon6 (3UTR)
    Flanking Genome Sequence: ET14316 - 3-prime edge
    ATCCCTACTC AAAACCAAAA ATTTGAAGAT GTCCAAAGCA ACTAAAAGAT 
    CACAAGAAAT AAGTTTTTCA AAGCTTTTAT TAGACAAATG ATGATAGAAA
    GATGTGGTCT TGAAAATTAA CCACATCCCA TTCACAATAG GATTGGAT
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 556402 [Map]; Strand: c
      • AT2G02160.1 - [+] show detail - CCCH-type zinc finger family protein
        Distance: -289; Region: promoter
    Flanking Genome Sequence: ET14316 - 5-prime edge
    CTTTATCCCT GGTTTTGAGA GTCTTCGAAT TACTCGGTTC AAGATGTCCT 
    TACCAAAGTG AAAACCAAAG TTTCGATTTT GGTTTGGATT TAATTTTGGT
    TAGATTTCCT TACCAATGTT TTAAAAGATC TACCAATCGG TTTACAATTT
    TGGTTCAAGT TCGGTTTAAA TCACCTTATC ATTGTCTATT TCACAACATT
    CCAAAGTCGC TGGTTCCATC AGAAGTTATA ATATCAAGGC AAACAATATG
    GCTAACAAAT AAACCAATAA TAAATCCCCA CGTGTCAGTA TTTGATTGAT
    TACAAATAAA CCGAACTTGA TCTATTGATA TTTCCCATCA CATAAGAAAA
    AAAAAGAGCC AAAAAAAAAA CTTTTAGGTT TAGTTTTAAA GGGCACACAC
    ACCCCCTCCC GAGTTTCTCT CTGGGGCGCT CTTTGGGGGG G

AT2G02160.1

Model type
Protein coding
Short Description
CCCH-type zinc finger family protein
Computational Description
CCCH-type zinc finger family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 10885 Blast hits to 7444 proteins in 511 species: Archae - 23; Bacteria - 415; Metazoa - 5228; Fungi - 922; Plants - 581; Viruses - 184; Other Eukaryotes - 3532 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02170.1

Model type
Protein coding
Short Description
Remorin family protein
Computational Description
Remorin family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT1G30320.1); Has 3690 Blast hits to 2594 proteins in 496 species: Archae - 6; Bacteria - 904; Metazoa - 645; Fungi - 344; Plants - 595; Viruses - 5; Other Eukaryotes - 1191 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02170.2

Model type
Protein coding
Short Description
Remorin family protein
Computational Description
Remorin family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT1G30320.1); Has 3690 Blast hits to 2594 proteins in 496 species: Archae - 6; Bacteria - 904; Metazoa - 645; Fungi - 344; Plants - 595; Viruses - 5; Other Eukaryotes - 1191 (source: NCBI BLink).
Link
InterPro Scan - TAIR