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Mutant Lines
ET14367

ET14367

CSHL Arabidopsis genetrap mutant lines

Original: ET14367

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14367

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 4; Position: 469654 [Map]; Strand: c
- AT4G01080.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 26
  Distance: -1360; Region: intergenic
- AT4G01090.1 - [+] show detail - Protein of unknown function (DUF3133)
  Distance: 861; Region: intergenic

TAGCACCACC ACTCTCGCAT CTTTTTTGAT GATATATTGG GTTATTCAAA 
ACATTGCTAT GTTTGTGAAT TCCTGAGACT TATTAGTTAT TAGAATGATG 
CAGGTAACTA GTTTAAATAT TTGGTATAAG TTTTACAATG GTAGAATTGG 
TTTTTAACAT TTGCGTGAAT GAACTAACAC TAGTATAGTA CTAGACTACT 
AGTATATAAA AAGATATGAA ACATTCTATT GACTTCAATT ATTGCTAATA 
ATATTTTATT TTATTTCTTC ATTGCTAAAA ATTTTTTGTA TTGAGAATTT 
CTTGATTCCT CACAATTTTA TTATTAGTGG ACAACTTCTC TTCACTCGA

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 76737 [Map]; Strand: c
  - AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
    Distance: -1353; Region: intergenic
  - AT4G00190.1 - [+] show detail - pectin methylesterase 38
    Distance: 3696; Region: intergenic
Flanking Genome Sequence: ET14367 - 5-prime edge
```
AAATGGTGGT CCTGTATTAT GGAATTTAGC GAAACCACAC ACTTGCGGGT 
AAAAATAATG ATGACAAAAT GATATACATT GGAATGTAGA GAAAGTATAT 
ACAAATACTA ATAAATAGAA AAGGGCATGG AATTGACGAG GATCGAGGGA 
AAGTGTGGTG TGGCAGAAAT GTTATTAAGT GTGAAAACAA CTGATGAATG 
AGCCTTTGCT TAATCACTTC CATGCACAAG TCCCTTTCCT CTTCATCTCA 
CTCAACC
```

AT4G00180.2

Model type: Protein coding
Short Description: Plant-specific transcription factor YABBY family protein
Curator Summary: YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description: YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00190.1

Model type: Protein coding
Short Description: pectin methylesterase 38
Computational Description: pectin methylesterase 38 (PME38); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, synergid; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 2963 Blast hits to 2921 proteins in 467 species: Archae - 10; Bacteria - 871; Metazoa - 1; Fungi - 198; Plants - 1837; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G01080.1

Model type: Protein coding
Short Description: TRICHOME BIREFRINGENCE-LIKE 26
Curator Summary: Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description: TRICHOME BIREFRINGENCE-LIKE 26 (TBL26); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 25 (TAIR:AT1G01430.1); Has 1341 Blast hits to 1324 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1336; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G01090.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF3133)
Computational Description: Protein of unknown function (DUF3133); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3133 (InterPro:IPR021480); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3133) (TAIR:AT1G01440.1); Has 1545 Blast hits to 1451 proteins in 231 species: Archae - 0; Bacteria - 62; Metazoa - 476; Fungi - 316; Plants - 452; Viruses - 2; Other Eukaryotes - 237 (source: NCBI BLink).
Link: InterPro Scan - TAIR