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ET14378

CSHL Arabidopsis genetrap mutant lines

Original: ET14378

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14378

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1354330 [Map]; Strand: c
      • AT4G03060.1 - [+] show detail - AOP2 (ALKENYL HYDROXALKYL PRODUCING 2); oxidoreductase, acting on paired dono...
        Distance: -476; Region: promoter
    Flanking Genome Sequence: ET14378 - 5-prime edge
    TTCCATCCTA CTTTCTCCCT GAATATAAAT TCACATTTTA TCTCAAAAAA 
    AAGAGAAAAA GAGAAAACTT TTTATCAAGA GAGAAAAGTT AACTTAAGTT
    ATAACTCGTT GAGTTGTTCT TCATCTTGTA CAACAATAAT GCCCACACAT
    CGTATGGATT GATATTTTCT ATGATGAAAA TAAACGATTC ACCAACTTTC
    CTTTTTTTGT ATATAAAATG TGAACTTTTA ATAGTATATA CCAACTTTCC
    TTCCTCTGTC TATTATTATT AAGCATGTGT TTGCTTAAAT TAAGCAAAGC
    GACAAAAAAA AAACTTAATC CAACCCCTTG GAAAAAATTT CCCTAAAAAA
    GGGGGCCCTT TCCTTTTTTT TCCTCACACA AAAAAAAAAA ATCTCTAGGG
    CTGGCAAGGT AAAACCATTT ATTTTACCAA AAGGCCTAAG GGAATTTTCC
    TTAGGCGTTC CAAAGGTTTT TTTTCCTAAT AAATAATGGC AACAACCGGC
    AAAAATTTGA AAACTTTTTT CGTTTCCCCC AAAAGGGGAA AAAAAAAG

AT4G03060.1

Model type
Pseudogene
Short Description
AOP2 (ALKENYL HYDROXALKYL PRODUCING 2); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Curator Summary
Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis.
Computational Description
similar to AOP3 (2-oxoglutarate?dependent dioxygenase 3), oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Arabidopsis thaliana] (TAIR:AT4G03050.1); similar to AOP3 (2-oxoglutarate?dependent dioxygenase 3), oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Arabidopsis thaliana] (TAIR:AT4G03050.2); similar to 2-oxoglutarate-dependent dioxygenase [Arabidopsis lyrata] (GB:AAL14664.1); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283)
Link
InterPro Scan - TAIR